View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_low_31 (Length: 340)
Name: NF1247_low_31
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 151 - 314
Target Start/End: Complemental strand, 3963052 - 3962889
Alignment:
| Q |
151 |
ttaaattaaaagaggtaaaagatacacgtaggtgatttgaattcaaaaaatgacctaaaaccacatattttggctgctgttttcattggggcgttgcttc |
250 |
Q |
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| T |
3963052 |
ttaaattaaaagaggtaaaagatacacgtaggtgatttgaattcaaaaaataatctaaaaccacgtattttggctgctgttttcattggggtgttgcttc |
3962953 |
T |
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| Q |
251 |
tctttgttatacttattgctcttgttcctcttatgttattttgctttggtgtatttttcttgtt |
314 |
Q |
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| T |
3962952 |
tctttgttatacttattgctcttgttcctcttatgttattttgctttggtgtatttttcttgtt |
3962889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 3963550 - 3963439
Alignment:
| Q |
48 |
caaagacccacataagacaaagaaaataacaacaccgcactacgatgaagaaatccaagaaaagacattaaaaagggacttaatttatgtaaagatcact |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3963550 |
caaagacccacataagacaaagaaaataacaacaccgcactacgatgaagaaatcctagaaaagacattaaaaagggacttaatttatttaaagatcacc |
3963451 |
T |
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| Q |
148 |
tatttaaattaa |
159 |
Q |
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| T |
3963450 |
tatttaaattaa |
3963439 |
T |
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