View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_low_32 (Length: 325)
Name: NF1247_low_32
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 25 - 317
Target Start/End: Complemental strand, 34920682 - 34920391
Alignment:
| Q |
25 |
gctacagatgctattttttcactacttcagaacttgtttgctgatttatcgcagcgattcgcaactgtgacatggagtctttgaaaacactgtaatctta |
124 |
Q |
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| T |
34920682 |
gctacagatgctattttt-cactacttcagaacttgtctgctaatttatcgtagcgtttcgcaactgtgacatggagtctttggaaacatcgtaatctta |
34920584 |
T |
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| Q |
125 |
gagtatcggatgatgtaacggaaactagtgctttagtggtggagagagcttgaaacatggttgttgattgacaattagcaaacatccctgactctattgt |
224 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
34920583 |
gagtatcggatgatgtaacggaaactaatgctttagtggtggagagagcttgaaacatggttgttgattgacaattagcaaacgcccctgacgctattgt |
34920484 |
T |
|
| Q |
225 |
ttccactgctctcagttcgtcttcatcgaccctcaatggggggccttctacttcgacattacacaatggcaatcattggcaacatcctatgct |
317 |
Q |
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| T |
34920483 |
ttccactgctcccagttcgtcttcatcgaccctcaatggggggccttctacttcgacattacacaatggcaatcattggcaacatcctatgct |
34920391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 25 - 316
Target Start/End: Complemental strand, 38015817 - 38015526
Alignment:
| Q |
25 |
gctacagatgctattttttcactacttcagaacttgtttgctgatttatcgcagcgattcgcaactgtgacatggagtctttgaaaacactgtaatctta |
124 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| | ||||||| ||| |||||| | ||||||| |
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| T |
38015817 |
gctacaaatgctattttttcactacttcagaacttgtctgctgatttatcgcaacgattagcaactgtaatatggagtattttgaaacaccgcaatctta |
38015718 |
T |
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| Q |
125 |
gagtatcggatgatgtaacggaaactagtgctttagtggtggagagagcttgaaacatggttgttgattgacaattagcaaacatccctgactctattgt |
224 |
Q |
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| T |
38015717 |
gagtttgggaagatgtaatagaaactagtgatttagttgtggagcgagctcgaaaaatggttgttgactggcaattagcaaccgcccctgacgctattgt |
38015618 |
T |
|
| Q |
225 |
ttccactgctctcagttcgtcttcatcgaccctcaatggggggccttctacttcgacattacacaatggcaatcattggcaacatcctatgc |
316 |
Q |
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|||||| | || ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
38015617 |
ttccacagatcccagttcgtcgtcattgaccctcaatggggggccttctacttcgacattacacaatggcagtcgatggcaacatcctatgc |
38015526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 149 - 295
Target Start/End: Original strand, 20660702 - 20660848
Alignment:
| Q |
149 |
ctagtgctttagtggtggagagagcttgaaacatggttgttgattgacaattagcaaacatccctgactctattgtttccactgctctcagttcgtcttc |
248 |
Q |
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|||| ||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||| || ||| | | || ||||||| ||| ||| ||| |||| |
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| T |
20660702 |
ctagcgctttagtggtggagtgagctcgaaacatggttgttgattggcaactagcaaacgcccttgatgccactgcttccactactcccaggtcgccttc |
20660801 |
T |
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| Q |
249 |
atcgaccctcaatggggggccttctacttcgacattacacaatggca |
295 |
Q |
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|||| ||||||||||| |||| ||| |||||| |||| ||||||| |
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| T |
20660802 |
atcgcacctcaatggggagcctcctaggtcgacactacaaaatggca |
20660848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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