View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_low_33 (Length: 324)
Name: NF1247_low_33
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 48 - 295
Target Start/End: Complemental strand, 12886859 - 12886599
Alignment:
| Q |
48 |
caacaactatccaactcaacccaacctaacaaagcaa-tatggcagatctaaaccaaagcatagaa------------aataataatctcccaaaactat |
134 |
Q |
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| T |
12886859 |
caacaaccatccaactcaacccaacctaacaaagcaaatatggcagatctaaacgaaagcatagaagaatctcaagaaaataataatctcccaaaagtat |
12886760 |
T |
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| Q |
135 |
tccttcatggtccacctgaattctccttcatcatccaacccaatccttctcacaatttccatatcttaaaccctacttctcttcctcctctccaccaatt |
234 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12886759 |
tccttcatggtccacctgaattctccttcatccttcaacccaatccttctcataatttccatatcttaaacccttcttctcttcctcctctccaccaatt |
12886660 |
T |
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| Q |
235 |
cttatccctcaatcctcaccatgcctcctccattgacgctattgtttgtaccggaggctac |
295 |
Q |
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| T |
12886659 |
cttatccctcaatcctcaccatgcctcctccattgccgctattgtttgtaccggaggctac |
12886599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 12899593 - 12899524
Alignment:
| Q |
171 |
aacccaatccttctcacaatttccatatcttaaaccctacttctcttcctcctctccaccaattcttatc |
240 |
Q |
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||||||| |||| |||||| ||||||||| ||||||| |||| ||||| |||||||||||||| |||| |
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| T |
12899593 |
aacccaaaccttatcacaacttccatatcataaacccatcttcccttccctctctccaccaattcatatc |
12899524 |
T |
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