View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1247_low_34 (Length: 323)

Name: NF1247_low_34
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1247_low_34
NF1247_low_34
[»] chr1 (4 HSPs)
chr1 (1-294)||(4366817-4367095)
chr1 (9-164)||(17561085-17561241)
chr1 (18-67)||(39379409-39379458)
chr1 (237-281)||(39379601-39379645)
[»] chr7 (19 HSPs)
chr7 (18-171)||(29431340-29431496)
chr7 (9-171)||(29454436-29454601)
chr7 (8-164)||(29898953-29899109)
chr7 (34-93)||(29859101-29859160)
chr7 (15-171)||(29895044-29895197)
chr7 (108-172)||(29922425-29922489)
chr7 (237-282)||(29894951-29894996)
chr7 (8-56)||(29884953-29885001)
chr7 (237-287)||(29106282-29106332)
chr7 (226-292)||(29873958-29874024)
chr7 (237-282)||(29074552-29074597)
chr7 (237-283)||(29858908-29858954)
chr7 (30-67)||(15572249-15572286)
chr7 (237-294)||(29898835-29898892)
chr7 (21-65)||(19637571-19637615)
chr7 (27-67)||(22021065-22021105)
chr7 (120-164)||(22088208-22088252)
chr7 (13-77)||(29445984-29446048)
chr7 (237-269)||(29884761-29884793)
[»] chr4 (2 HSPs)
chr4 (17-65)||(3561305-3561353)
chr4 (237-287)||(11849206-11849256)
[»] chr2 (2 HSPs)
chr2 (22-64)||(18921079-18921121)
chr2 (22-62)||(18909152-18909192)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 4366817 - 4367095
Alignment:
Q  1 tccccaaagtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4366817 tccccaaagtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttgat 4366916  T
Q  101 ttggatggtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaattgccatgatagctgaaagtttcaggtgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  4366917 ttggatggtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaattgccatgatagctgaaagtttcag---- 4367012  T
Q  201 agagtttcgaaaatcttgaaaacgaccaaatatcgcagatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcatcg 294  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367013 -----------aatcttgaaaacgaccaaatatcgcagatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcatcg 4367095  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 164
Target Start/End: Original strand, 17561085 - 17561241
Alignment:
Q  9 gtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacactt-agaatcctcacaatgcttctctgttgatttggatg 107  Q
    |||||||| |||||||||||  || ||||||| |||||||||||||||||||||||||| |||| | ||| |||||| |||| |||  ||||  |||||     
T  17561085 gtccaaatcaagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaaattctcacattgctactcctttgacatggatt 17561184  T
Q  108 gtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaa 164  Q
    |||||| ||  |||| ||||||||| | || || ||| | ||||||||||| |||||    
T  17561185 gtaacgtgaagccactaccttataaatgtcggtggaagtatcacaaccaaagttgaa 17561241  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 39379409 - 39379458
Alignment:
Q  18 aagaggaacaataggaaaactttcaatatctctccaaacgttatcaccca 67  Q
    |||||||||||  || ||||||||||||| ||||||||| ||||||||||    
T  39379409 aagaggaacaaccgggaaactttcaatatttctccaaacattatcaccca 39379458  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 39379601 - 39379645
Alignment:
Q  237 agatgttgtcctggttgctgggttccataaacgaaaccagtactc 281  Q
    ||||||| |||| || ||||||||||||||||| |||||||||||    
T  39379601 agatgttttcctagtggctgggttccataaacggaaccagtactc 39379645  T

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Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 29431340 - 29431496
Alignment:
Q  18 aagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttga---tttggatggtaacgg 114  Q
    ||||||||||| ||| ||||||||||||||||||||||| ||||||| || ||||| |||  | ||| |||||||| ||| |   ||||||| |||||||    
T  29431340 aagaggaacaacagggaaactttcaatatctctccaaacattatcactcaaacttaaaattttgacattgcttctcagttcatcttttggattgtaacgg 29431439  T
Q  115 gacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaa 171  Q
    ||| |||||||||||||||| || |||| ||||||| ||||||| || || ||||||    
T  29431440 gacgccaccaccttataagtgtcggttgcattgtcaaaaccaaagttaaacttgaaa 29431496  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 29454436 - 29454601
Alignment:
Q  9 gtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttct---ctgttgatttgga 105  Q
    |||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||  || |||||||||  | ||| |||||||    || || | ||||    
T  29454436 gtccaaatgaagaggagcaacagggaaactttcaatatctctccaaacattatcatgcaaacttagaattttgacattgcttctgcagtgatgttctgga 29454535  T
Q  106 tggtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaa 171  Q
    | |||||||||| ||||| | || || |||||||||||||||||| | ||||| ||||| ||||||    
T  29454536 tcgtaacgggacgccaccgctttctaggtatcagttgaattgtcatagccaaagttgaacttgaaa 29454601  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 29899109 - 29898953
Alignment:
Q  8 agtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttgatttggatg 107  Q
    ||||| |||||||||||||||  || ||||||||||||||||||||||| |||||||| | ||| |||||  ||||| ||||||||  | ||  |||||     
T  29899109 agtccgaatgaagaggaacaactgggaaactttcaatatctctccaaacattatcaccaaaactgagaattttcacattgcttctcaatcgaactggatt 29899010  T
Q  108 gtaacgggacaccaccaccttataagtatcag-ttgaattgtcacaaccaaacttgaa 164  Q
    ||||||| |  |||||||||||||||| || | ||||||||||| ||||||| |||||    
T  29899009 gtaacggtatgccaccaccttataagt-tctgtttgaattgtcaaaaccaaatttgaa 29898953  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 29859160 - 29859101
Alignment:
Q  34 aaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctc 93  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  29859160 aaactttcaatatctctccaaacgttatcacccaaacttagaattctcacattgcttctc 29859101  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 29895197 - 29895044
Alignment:
Q  15 atgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttgatttggatggtaacgg 114  Q
    ||||||||| |||  ||| |||||||||||||||||||||| |||   ||||||| ||||||| || ||||||||||||| || |  ||||| | |||      
T  29895197 atgaagagggacagcagggaaactttcaatatctctccaaaagtt---acccacagttagaattctgacaatgcttctcttttcaagtggattgcaacaa 29895101  T
Q  115 gacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaa 171  Q
     || ||||||||||||||||  | |||||||||||| |||||||| |||| ||||||    
T  29895100 tacgccaccaccttataagtgccggttgaattgtcataaccaaacctgaacttgaaa 29895044  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 29922425 - 29922489
Alignment:
Q  108 gtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaat 172  Q
    ||||||| || ||| |||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  29922425 gtaacggaacgccaacaccttataagtatcagttgaattgtcaaaaccaaatttgaaattgaaat 29922489  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 29894996 - 29894951
Alignment:
Q  237 agatgttgtcctggttgctgggttccataaacgaaaccagtactct 282  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||    
T  29894996 agatgttgtcctggtggctgggttcgataaacgaaaccagtactct 29894951  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 29885001 - 29884953
Alignment:
Q  8 agtccaaatgaagaggaacaataggaaaactttcaatatctctccaaac 56  Q
    |||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  29885001 agtccagatgaagaggaacaactggaaaactttcaatatctctccaaac 29884953  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 29106332 - 29106282
Alignment:
Q  237 agatgttgtcctggttgctgggttccataaacgaaaccagtactctctata 287  Q
    ||||||||||||||| ||||||||||||||||| | |||||||||| ||||    
T  29106332 agatgttgtcctggtggctgggttccataaacggagccagtactctatata 29106282  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 29874024 - 29873958
Alignment:
Q  226 ccaaatatcgcagatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcat 292  Q
    |||||||| | ||||||| ||||||| |||||||||||||||| || |||||||||| ||| |||||    
T  29874024 ccaaatattggagatgttatcctggtggctgggttccataaacaaagccagtactctttatcttcat 29873958  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 29074597 - 29074552
Alignment:
Q  237 agatgttgtcctggttgctgggttccataaacgaaaccagtactct 282  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||||    
T  29074597 agatgttgtcctggtggctgggttccataaacggagccagtactct 29074552  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 29858954 - 29858908
Alignment:
Q  237 agatgttgtcctggttgctgggttccataaacgaaaccagtactctc 283  Q
    |||||||||||| || ||||||||||||||||| |||||||| ||||    
T  29858954 agatgttgtccttgtggctgggttccataaacggaaccagtaatctc 29858908  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 15572249 - 15572286
Alignment:
Q  30 aggaaaactttcaatatctctccaaacgttatcaccca 67  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  15572249 aggaaaacaatcaatatctctccaaacgttatcaccca 15572286  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 29898892 - 29898835
Alignment:
Q  237 agatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcatcg 294  Q
    ||||||||||||||| ||||||||||||||||| |   ||||||||  ||||||||||    
T  29898892 agatgttgtcctggtggctgggttccataaacggagatagtactctagatattcatcg 29898835  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 19637571 - 19637615
Alignment:
Q  21 aggaacaataggaaaactttcaatatctctccaaacgttatcacc 65  Q
    |||||| ||||||||||||| ||||| ||||||||| ||||||||    
T  19637571 aggaaccataggaaaactttgaatatttctccaaactttatcacc 19637615  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 22021105 - 22021065
Alignment:
Q  27 aataggaaaactttcaatatctctccaaacgttatcaccca 67  Q
    |||||||||||||||||||| ||||||||| ||||| ||||    
T  22021105 aataggaaaactttcaatatttctccaaacattatcgccca 22021065  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 22088252 - 22088208
Alignment:
Q  120 caccaccttataagtatcagttgaattgtcacaaccaaacttgaa 164  Q
    ||||||||||||||| || |||||||| ||| |||||||||||||    
T  22088252 caccaccttataagtttctgttgaattatcataaccaaacttgaa 22088208  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 29445984 - 29446048
Alignment:
Q  13 aaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaat 77  Q
    ||||||||||||||||  || ||||||| ||| | ||||||||| |||||||| | |||||||||    
T  29445984 aaatgaagaggaacaacggggaaactttgaatctgtctccaaacattatcacctatacttagaat 29446048  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 29884793 - 29884761
Alignment:
Q  237 agatgttgtcctggttgctgggttccataaacg 269  Q
    ||||||||||||||| |||||||||||||||||    
T  29884793 agatgttgtcctggtggctgggttccataaacg 29884761  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 3561305 - 3561353
Alignment:
Q  17 gaagaggaacaataggaaaactttcaatatctctccaaacgttatcacc 65  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  3561305 gaagaggaacaataggaaaactttcaatatttctccaaacattatcacc 3561353  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 11849206 - 11849256
Alignment:
Q  237 agatgttgtcctggttgctgggttccataaacgaaaccagtactctctata 287  Q
    ||||||||||||||| ||||||||||||||||| | |||||||||| ||||    
T  11849206 agatgttgtcctggtggctgggttccataaacggagccagtactctgtata 11849256  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 18921079 - 18921121
Alignment:
Q  22 ggaacaataggaaaactttcaatatctctccaaacgttatcac 64  Q
    ||||||||||||||||||| |||||| |||||||| |||||||    
T  18921079 ggaacaataggaaaactttgaatatccctccaaacattatcac 18921121  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 18909152 - 18909192
Alignment:
Q  22 ggaacaataggaaaactttcaatatctctccaaacgttatc 62  Q
    ||||||||||||||||||  ||||||||||||||| |||||    
T  18909152 ggaacaataggaaaacttggaatatctctccaaacattatc 18909192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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