View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1247_low_35 (Length: 318)

Name: NF1247_low_35
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1247_low_35
NF1247_low_35
[»] chr8 (13 HSPs)
chr8 (19-239)||(8806460-8806675)
chr8 (184-296)||(43368619-43368731)
chr8 (184-310)||(27645929-27646055)
chr8 (194-259)||(2364389-2364454)
chr8 (194-308)||(12361219-12361335)
chr8 (186-227)||(30627872-30627913)
chr8 (199-254)||(8535989-8536044)
chr8 (256-309)||(8806759-8806812)
chr8 (195-272)||(37461205-37461281)
chr8 (183-247)||(14926900-14926964)
chr8 (243-307)||(14949894-14949958)
chr8 (243-315)||(26473730-26473802)
chr8 (184-224)||(38602438-38602478)
[»] chr7 (12 HSPs)
chr7 (200-306)||(39360052-39360158)
chr7 (196-302)||(33894660-33894766)
chr7 (200-306)||(39334222-39334328)
chr7 (194-260)||(44151405-44151471)
chr7 (183-308)||(22387814-22387939)
chr7 (197-253)||(25014031-25014087)
chr7 (255-310)||(12234879-12234934)
chr7 (184-270)||(23214920-23215006)
chr7 (249-306)||(28520996-28521053)
chr7 (196-297)||(36598287-36598388)
chr7 (196-272)||(8094369-8094445)
chr7 (184-224)||(19302482-19302522)
[»] chr2 (11 HSPs)
chr2 (194-288)||(9478346-9478440)
chr2 (184-272)||(18961953-18962044)
chr2 (249-312)||(10285883-10285946)
chr2 (195-273)||(43456637-43456715)
chr2 (184-277)||(7862818-7862909)
chr2 (194-307)||(32821837-32821950)
chr2 (255-308)||(34652026-34652079)
chr2 (194-307)||(43985237-43985350)
chr2 (256-308)||(1939323-1939375)
chr2 (184-276)||(13866937-13867029)
chr2 (195-259)||(17775396-17775460)
[»] chr6 (6 HSPs)
chr6 (195-308)||(2460081-2460194)
chr6 (243-315)||(1669776-1669848)
chr6 (184-315)||(281767-281898)
chr6 (183-222)||(13908353-13908392)
chr6 (255-308)||(9667975-9668028)
chr6 (184-224)||(35069531-35069571)
[»] chr4 (12 HSPs)
chr4 (195-308)||(27123282-27123395)
chr4 (196-296)||(2996612-2996712)
chr4 (243-288)||(27970105-27970150)
chr4 (197-310)||(30207503-30207616)
chr4 (185-224)||(15173223-15173262)
chr4 (183-273)||(6428080-6428170)
chr4 (194-260)||(33534098-33534164)
chr4 (184-310)||(53315351-53315477)
chr4 (198-267)||(18628486-18628555)
chr4 (184-308)||(6987660-6987784)
chr4 (184-224)||(27043749-27043789)
chr4 (200-308)||(56007706-56007814)
[»] chr5 (6 HSPs)
chr5 (197-308)||(37611147-37611258)
chr5 (197-308)||(37787877-37787988)
chr5 (194-267)||(8090004-8090077)
chr5 (184-222)||(17369316-17369354)
chr5 (184-266)||(31208541-31208623)
chr5 (184-269)||(37112197-37112281)
[»] chr3 (15 HSPs)
chr3 (196-270)||(22667468-22667542)
chr3 (196-270)||(22724107-22724181)
chr3 (184-224)||(34610725-34610765)
chr3 (220-308)||(2175804-2175892)
chr3 (196-308)||(37273161-37273273)
chr3 (197-273)||(41724274-41724350)
chr3 (197-315)||(31010422-31010540)
chr3 (197-315)||(31710819-31710937)
chr3 (197-315)||(31711074-31711192)
chr3 (195-261)||(50211809-50211875)
chr3 (243-308)||(21574517-21574582)
chr3 (196-273)||(24624272-24624349)
chr3 (250-315)||(30923883-30923948)
chr3 (248-308)||(2152161-2152221)
chr3 (184-308)||(20192525-20192649)
[»] chr1 (10 HSPs)
chr1 (183-305)||(4868430-4868551)
chr1 (198-315)||(32515374-32515491)
chr1 (196-310)||(15581279-15581393)
chr1 (194-256)||(27807194-27807256)
chr1 (240-315)||(15515561-15515636)
chr1 (184-273)||(23373232-23373321)
chr1 (184-237)||(24460320-24460373)
chr1 (183-223)||(6292604-6292644)
chr1 (194-270)||(16980868-16980944)
chr1 (186-222)||(29793619-29793655)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 8806460 - 8806675
Alignment:
Q  19 aagcttgcataaactctaccaaattccaccttaatagtttaggtcaaaccgagaaggagaagaaacaacagaaaccacacttttatttgcattttcacta 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||||||||| |||| |||  |||||||||||| |||||| |    
T  8806460 aagcttgcataaactcttccaaattccaccttaatagtttaggtcgaactgagaagcagaagaaacaagagaagccatgcttttatttgcagtttcacaa 8806559  T
Q  119 ctttctggctctagtttagaaattaatggttttgttttgtatacatgtcgaatgaagtcaatgattgtttgtatggacttatttgaacttatctactgac 218  Q
    ||||||||||||| |||| |||| ||||     ||||||||||||||| |||||||||||||||||||||| || ||  |||||| ||||||||||||||    
T  8806560 ctttctggctctactttataaatgaatg-----gttttgtatacatgttgaatgaagtcaatgattgtttggattgatgtatttgtacttatctactgac 8806654  T
Q  219 ataagtactcgtaagactggt 239  Q
    ||||  ||| |||||||||||    
T  8806655 ataaacacttgtaagactggt 8806675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 296
Target Start/End: Original strand, 43368619 - 43368731
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgc 283  Q
    |||||| || ||||||||||| |||||||||| ||||||| | | || |||||||| |  | || ||||||||||||| ||||||||||  |||||||      
T  43368619 tgtttggattgacttatttgatcttatctactaacataagcatttgtgagactggttgtaacagcttatgaaaacaacttatgacatgttcattagctat 43368718  T
Q  284 tttcaactaattt 296  Q
    |||||||| ||||    
T  43368719 tttcaacttattt 43368731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 310
Target Start/End: Complemental strand, 27646055 - 27645929
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgc 283  Q
    |||||| || ||| ||||| |||||| ||| || || ||| | | ||||||| | | ||||||| ||||| | ||||| |||||||| ||||| ||||      
T  27646055 tgtttggattgacgtatttaaacttacctattggcaaaagcatttgtaagaccgtttgagagagcttatgcatacaacttatgacatatctataagctat 27645956  T
Q  284 tttcaactaatttctataagctctcta 310  Q
    |||||||| ||||||||||||||||||    
T  27645955 tttcaacttatttctataagctctcta 27645929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 2364389 - 2364454
Alignment:
Q  194 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaaca 259  Q
    ||||||||||||||||||| |||||||||||||| || |||||| | |  |||| |||||||||||    
T  2364389 gacttatttgaacttatcttctgacataagtacttgtgagactgtttggaagagattatgaaaaca 2364454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 308
Target Start/End: Complemental strand, 12361335 - 12361219
Alignment:
Q  194 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagag--tttatgaaaacaacatatgacatgtctattagctgctttcaact 291  Q
    |||||||||||||||||||||||| ||||||||| || |||||  | |||||||   ||||  ||| | | ||||||||||| || ||||| ||||||||    
T  12361335 gacttatttgaacttatctactgatataagtacttgttagactctttgagagagatcttatagaaatagcttatgacatgtccataagctgttttcaact 12361236  T
Q  292 aatttctataagctctc 308  Q
     ||||| || |||||||    
T  12361235 tatttccattagctctc 12361219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 30627872 - 30627913
Alignment:
Q  186 tttgtatggacttatttgaacttatctactgacataagtact 227  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  30627872 tttgtattgacttatttcaacttatctactgacataagtact 30627913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 8535989 - 8536044
Alignment:
Q  199 atttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatga 254  Q
    ||||||| ||||||||||||||||||||| || |||||| | | ||||||||||||    
T  8535989 atttgaatttatctactgacataagtacttgtgagactgtttgggagagtttatga 8536044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 8806759 - 8806812
Alignment:
Q  256 aacaacatatgacatgtctattagctgctttcaactaatttctataagctctct 309  Q
    |||||| |||||||||||||| |||||| || |||| | |||||||||||||||    
T  8806759 aacaacttatgacatgtctataagctgcatttaacttacttctataagctctct 8806812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 37461281 - 37461205
Alignment:
Q  195 acttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgt 272  Q
    |||||||||||||||||||||||| |||  ||| | |||||||   ||||||||||||| ||| ||| ||||||||||    
T  37461281 acttatttgaacttatctactgac-taaacactagcaagactgtatgagagagtttatggaaataacttatgacatgt 37461205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 14926900 - 14926964
Alignment:
Q  183 ttgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagag 247  Q
    ||||||| || ||||||||||||||||| ||||| |||||| ||| || |||||| | |||||||    
T  14926900 ttgtttggattgacttatttgaacttatttactggcataagcacttgtgagactgtttgagagag 14926964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 14949958 - 14949894
Alignment:
Q  243 gagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctct 307  Q
    ||||| ||||||||| ||| ||||||||||| || ||||| ||||| || |||||||||| ||||    
T  14949958 gagagcttatgaaaataacttatgacatgtccataagctgttttcagcttatttctataatctct 14949894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 26473730 - 26473802
Alignment:
Q  243 gagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgata 315  Q
    ||||| ||||||||||| | |||||||||||||| ||||  ||| |||| ||||  |||||||||||| ||||    
T  26473730 gagagcttatgaaaacagcttatgacatgtctataagctagttttaacttattttcataagctctctaggata 26473802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 38602478 - 38602438
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagt 224  Q
    |||||| || ||||||||||| |||||||||||||||||||    
T  38602478 tgtttggattgacttatttgagcttatctactgacataagt 38602438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 306
Target Start/End: Complemental strand, 39360158 - 39360052
Alignment:
Q  200 tttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttcta 299  Q
    |||||||||||||||||  |||| ||||||| |||||| | || |||||||||| ||||||| |||||||| || || || |||||||| || ||||| |    
T  39360158 tttgaacttatctactggaataattactcgtgagactgtttgatagagtttatggaaacaacttatgacatatccataagttgctttcagcttatttcaa 39360059  T
Q  300 taagctc 306  Q
    |||||||    
T  39360058 taagctc 39360052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 302
Target Start/End: Complemental strand, 33894766 - 33894660
Alignment:
Q  196 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatt 295  Q
    ||||||||| |||||| | ||||||||| ||| || |||||| | | ||||| ||||||||||| ||||||||||||| || || || ||||| || |||    
T  33894766 cttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttatt 33894667  T
Q  296 tctataa 302  Q
    || ||||    
T  33894666 tcaataa 33894660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 306
Target Start/End: Complemental strand, 39334328 - 39334222
Alignment:
Q  200 tttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttcta 299  Q
    |||||||||||||||||  |||| ||||||| |||||| | |  |||||||||| ||||||  ||||||||||| || || ||| |||| || ||||| |    
T  39334328 tttgaacttatctactggaataattactcgtgagactgtttggtagagtttatggaaacaatttatgacatgtccataagttgcattcagcttatttcca 39334229  T
Q  300 taagctc 306  Q
    |||||||    
T  39334228 taagctc 39334222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 44151405 - 44151471
Alignment:
Q  194 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaa 260  Q
    ||||||||||||||||| |||||||||||||||| || ||| |  | ||||||| ||||||||||||    
T  44151405 gacttatttgaacttatatactgacataagtacttgtgagattatttgagagagcttatgaaaacaa 44151471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 308
Target Start/End: Original strand, 22387814 - 22387939
Alignment:
Q  183 ttgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctg 282  Q
    ||||||| || |||||| | |||||||| |||||||||||  ||  || |||||| | | ||||| ||||||||||||| |||| ||||| ||| | |||    
T  22387814 ttgtttggattgacttactagaacttatttactgacataaacacgtgtgagactgtttgggagagcttatgaaaacaacttatggcatgtttataaactg 22387913  T
Q  283 ctttcaactaatttctataagctctc 308  Q
     ||| |||| ||||| ||||||||||    
T  22387914 tttttaacttatttccataagctctc 22387939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 25014087 - 25014031
Alignment:
Q  197 ttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatg 253  Q
    ||||||||| ||||||||||||| ||| ||| ||||||||| | |||||||||||||    
T  25014087 ttatttgaatttatctactgacacaagcacttgtaagactgtttgagagagtttatg 25014031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 12234879 - 12234934
Alignment:
Q  255 aaacaacatatgacatgtctattagctgctttcaactaatttctataagctctcta 310  Q
    ||||||| |||||||||||||| ||||| ||||| || ||||| ||||||||||||    
T  12234879 aaacaacttatgacatgtctataagctgttttcagcttatttccataagctctcta 12234934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 270
Target Start/End: Complemental strand, 23215006 - 23214920
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacat 270  Q
    |||||| || ||||||||||| ||||||||||  |||||  |||  | |||||| | |||||| |||||||||||||| ||||||||    
T  23215006 tgtttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttatgacat 23214920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 28520996 - 28521053
Alignment:
Q  249 ttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctc 306  Q
    ||||| ||||||| |||||||||||||| ||||| ||||| ||| |||| ||||||||    
T  28520996 ttatggaaacaacttatgacatgtctataagctgttttcagctattttccataagctc 28521053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 297
Target Start/End: Original strand, 36598287 - 36598388
Alignment:
Q  196 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatt 295  Q
    |||||||||||||| ||||||||||||| | | || ||| || | ||||||| ||||| ||||| | ||||||||||  || ||||| ||||| || |||    
T  36598287 cttatttgaacttaactactgacataagcaattgtgagattgtttgagagagcttatggaaacatcttatgacatgttcataagctgttttcagcttatt 36598386  T
Q  296 tc 297  Q
    ||    
T  36598387 tc 36598388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 8094445 - 8094369
Alignment:
Q  196 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgt 272  Q
    ||||||||| ||||||||||  |||||| ||| || |||||  | |||||| |||||||||||| | ||||||||||    
T  8094445 cttatttgagcttatctactagcataagcacttgtgagactatttgagagattttatgaaaacagcttatgacatgt 8094369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 19302482 - 19302522
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagt 224  Q
    |||||| || ||||||||||| |||||||||||||||||||    
T  19302482 tgtttgaattgacttatttgagcttatctactgacataagt 19302522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 288
Target Start/End: Complemental strand, 9478440 - 9478346
Alignment:
Q  194 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttca 288  Q
    |||||||||||||||||||||  ||||||||||| ||  ||||| | ||||||||||||| ||||||| ||| ||||||| || ||||| |||||    
T  9478440 gacttatttgaacttatctaccaacataagtacttgtgtgactgtttgagagagtttatgcaaacaacttattacatgtccataagctgttttca 9478346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 272
Target Start/End: Original strand, 18961953 - 18962044
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagt---actcgtaagactggtcgagagagtttatgaaaacaacatatgacatgt 272  Q
    |||||| || ||||||||||||| |||||| || ||||||    ||||||||| ||| ||| ||||| ||||||||||| ||||||||||||    
T  18961953 tgtttggattgacttatttgaacctatctattgtcataagctaaactcgtaaggctgttcgggagagcttatgaaaacagcatatgacatgt 18962044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 312
Target Start/End: Complemental strand, 10285946 - 10285883
Alignment:
Q  249 ttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatg 312  Q
    ||||||||| ||| ||||||||||| || ||||| |||||||| ||||| ||||| ||||||||    
T  10285946 ttatgaaaataacttatgacatgtccataagctgttttcaacttatttccataagttctctatg 10285883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 273
Target Start/End: Original strand, 43456637 - 43456715
Alignment:
Q  195 acttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtc 273  Q
    |||||||||||||||| |||| ||||||  ||| ||||||||| | || |||| || ||||||||||  ||||||||||    
T  43456637 acttatttgaacttatttactcacataaacacttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgtc 43456715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 277
Target Start/End: Complemental strand, 7862909 - 7862818
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctatt 277  Q
    |||||| || |||||||||||| |||||||||||| |||  |||  | |||||| ||||||||| ||| ||||||||| ||| |||||||||||    
T  7862909 tgtttggattgacttatttgaa-ttatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttataacatgtctatt 7862818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 307
Target Start/End: Complemental strand, 32821950 - 32821837
Alignment:
Q  194 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaa 293  Q
    ||||||||||| |||||||||  || |||| | | | ||||||| | |  |||||||||  ||||||| ||||||||||| || ||||| |||||  | |    
T  32821950 gacttatttgagcttatctaccaacgtaagcatttgcaagactgtttggaagagtttatagaaacaacttatgacatgtccataagctgttttcagttta 32821851  T
Q  294 tttctataagctct 307  Q
    ||||||||||||||    
T  32821850 tttctataagctct 32821837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 34652026 - 34652079
Alignment:
Q  255 aaacaacatatgacatgtctattagctgctttcaactaatttctataagctctc 308  Q
    ||||||| ||||||||||| || ||||| |||||||| ||||| ||||||||||    
T  34652026 aaacaacttatgacatgtccataagctgttttcaacttatttccataagctctc 34652079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 307
Target Start/End: Complemental strand, 43985350 - 43985237
Alignment:
Q  194 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaa 293  Q
    ||||||||| |  ||||||||||||||||  ||| |||| |||| | ||||||| |||   ||||||| ||||||||||| || ||||  ||||||||      
T  43985350 gacttatttaagtttatctactgacataaacacttgtaaaactgtttgagagagattactgaaacaacttatgacatgtccataagcttttttcaacttg 43985251  T
Q  294 tttctataagctct 307  Q
    |||| |||||||||    
T  43985250 tttccataagctct 43985237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 1939323 - 1939375
Alignment:
Q  256 aacaacatatgacatgtctattagctgctttcaactaatttctataagctctc 308  Q
    |||||| ||||||||||| || ||||| |||||||| ||||| ||||||||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaacttatttccataagctctc 1939375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 13867029 - 13866937
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctat 276  Q
    |||||| || ||| ||||||| ||||||||||| |||||  ||| || |||||| | ||||||  ||| ||||||||| ||||||||| ||||    
T  13867029 tgtttggattgacctatttgagcttatctactgccataaacacttgtgagactgtttgagagaacttaagaaaacaacctatgacatgcctat 13866937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 17775396 - 17775460
Alignment:
Q  195 acttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaaca 259  Q
    |||||||||| | ||||||||||||||||  ||  |||||||| | ||||| |||||||||||||    
T  17775396 acttatttgagcatatctactgacataagctcttttaagactgtttgagagggtttatgaaaaca 17775460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 308
Target Start/End: Original strand, 2460081 - 2460194
Alignment:
Q  195 acttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaat 294  Q
    |||||||||| |||||  |||  |||||||||| || |||||| | ||||||| ||||| ||||||| |||||||||||| | || || |||||||| ||    
T  2460081 acttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttat 2460180  T
Q  295 ttctataagctctc 308  Q
    ||| ||||||||||    
T  2460181 ttccataagctctc 2460194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 1669776 - 1669848
Alignment:
Q  243 gagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgata 315  Q
    ||||| ||||||||||||| |||||||||||||| ||||| ||||| || ||||| | |||| ||||| ||||    
T  1669776 gagagcttatgaaaacaacttatgacatgtctataagctgttttcagctcatttcgacaagccctctaggata 1669848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 315
Target Start/End: Original strand, 281767 - 281898
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgc 283  Q
    |||||| || |||||| ||||  |||| || ||||||||||||| || |||||| | | ||||| | ||| || |||| |||||||||||||| || ||     
T  281767 tgtttggattgacttacttgagattatgtagtgacataagtacttgtgagactgtttgggagagctaatggaagcaacttatgacatgtctataagttgt 281866  T
Q  284 tttcaactaatttctataagctctctatgata 315  Q
    ||||| || ||||| || ||||||||| ||||    
T  281867 tttcagcttatttccatgagctctctaggata 281898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 13908392 - 13908353
Alignment:
Q  183 ttgtttgtatggacttatttgaacttatctactgacataa 222  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  13908392 ttgtttgaattgacttatttgaacttatctactgacataa 13908353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 9667975 - 9668028
Alignment:
Q  255 aaacaacatatgacatgtctattagctgctttcaactaatttctataagctctc 308  Q
    ||||||| ||||||||||| || ||||| |||||||| ||||| ||||||||||    
T  9667975 aaacaacttatgacatgtccataagctgttttcaacttatttccataagctctc 9668028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 35069531 - 35069571
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagt 224  Q
    ||||||||| | ||||||||| |||||||||||||||||||    
T  35069531 tgtttgtattggcttatttgagcttatctactgacataagt 35069571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 308
Target Start/End: Original strand, 27123282 - 27123395
Alignment:
Q  195 acttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaat 294  Q
    |||||||||| |||||  |||  |||||||||| || |||||| | ||||||| ||||| ||||||| |||||||||||| | || || |||||||| ||    
T  27123282 acttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttat 27123381  T
Q  295 ttctataagctctc 308  Q
    ||| ||||||||||    
T  27123382 ttccataagctctc 27123395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 296
Target Start/End: Complemental strand, 2996712 - 2996612
Alignment:
Q  196 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatt 295  Q
    ||||||||||||||| || ||||||||| |||  | |||||| | ||||||| ||||||||||||| ||||||||||| || ||||  |||||||| |||    
T  2996712 cttatttgaacttatttattgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttatt 2996613  T
Q  296 t 296  Q
    |    
T  2996612 t 2996612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 27970150 - 27970105
Alignment:
Q  243 gagagtttatgaaaacaacatatgacatgtctattagctgctttca 288  Q
    ||||||||||||||||||| |||||||||||||| ||||| |||||    
T  27970150 gagagtttatgaaaacaacttatgacatgtctataagctgttttca 27970105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 310
Target Start/End: Original strand, 30207503 - 30207616
Alignment:
Q  197 ttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaattt 296  Q
    ||||||||  |||||||| | |||||  ||| || |||||| ||||||||| |||| | |||| |||||||||||||| | ||||| ||||| || ||||    
T  30207503 ttatttgattttatctacaggcataaccacttgtgagactgatcgagagagcttataagaacagcatatgacatgtctgtaagctgttttcagcttattt 30207602  T
Q  297 ctataagctctcta 310  Q
    | |||| |||||||    
T  30207603 ccataatctctcta 30207616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 15173223 - 15173262
Alignment:
Q  185 gtttgtatggacttatttgaacttatctactgacataagt 224  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  15173223 gtttggattgacttatttgaacttatctactgacataagt 15173262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 273
Target Start/End: Complemental strand, 6428170 - 6428080
Alignment:
Q  183 ttgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtc 273  Q
    ||||||| || ||||||||||| ||||| || ||  ||||| ||| || |||| | | ||||||| ||||||||||||| |||||||||||    
T  6428170 ttgtttgaattgacttatttgagcttatatattggtataagcacttgtgagacagtttgagagagattatgaaaacaacttatgacatgtc 6428080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 33534098 - 33534164
Alignment:
Q  194 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaa 260  Q
    ||||||||||| |||||||| ||||||||||||| || ||| |  | ||||||| ||||||||||||    
T  33534098 gacttatttgagcttatctagtgacataagtacttgtgagagtatttgagagagcttatgaaaacaa 33534164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 310
Target Start/End: Complemental strand, 53315477 - 53315351
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgc 283  Q
    |||||| || ||||||||||| |||||| ||||  ||||| ||   |||||||  | | ||||| ||||||||||||||||| ||||||| || ||||      
T  53315477 tgtttggattgacttatttgagcttatccactggtataagcacatataagactatttgtgagagcttatgaaaacaacatatcacatgtccataagctat 53315378  T
Q  284 tttcaactaatttctataagctctcta 310  Q
    ||| |||| ||||  ||||||||||||    
T  53315377 ttttaacttattttcataagctctcta 53315351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 18628486 - 18628555
Alignment:
Q  198 tatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatga 267  Q
    ||||||| |||||||||||||||||  ||| || |||||| | | ||||| ||||||||||||| |||||    
T  18628486 tatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttatga 18628555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 308
Target Start/End: Original strand, 6987660 - 6987784
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgc 283  Q
    ||||||||| |||||| ||||  |||||||||  |||||||  | || |||||| | | ||||| ||||| | ||||| ||||||||||| || | ||      
T  6987660 tgtttgtattgacttaattgagtttatctactagcataagtgtttgtgagactgtttgggagagcttatggatacaacttatgacatgtccataaactat 6987759  T
Q  284 tttcaactaatttctataagctctc 308  Q
    |||||||| ||||| ||||||||||    
T  6987760 tttcaacttatttccataagctctc 6987784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 27043749 - 27043789
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagt 224  Q
    |||||| || ||||||||||| |||||||||||||||||||    
T  27043749 tgtttggattgacttatttgagcttatctactgacataagt 27043789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 56007814 - 56007706
Alignment:
Q  200 tttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttcta 299  Q
    ||||||||||||||||| |||||  ||| ||||||||| | ||||||| | ||  ||  ||| ||||||||||| |||  ||  ||| |||| |||||||    
T  56007814 tttgaacttatctactggcataatcacttgtaagactgtttgagagagctaatacaagtaacttatgacatgtcgattgtctattttgaacttatttcta 56007715  T
Q  300 taagctctc 308  Q
    |||||||||    
T  56007714 taagctctc 56007706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 308
Target Start/End: Original strand, 37611147 - 37611258
Alignment:
Q  197 ttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaattt 296  Q
    |||||||||||||||||||| || ||||||| || ||| || | ||||||| ||||||||||||| | ||||||||  || ||||| |||||  | ||||    
T  37611147 ttatttgaacttatctactggcacaagtacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttattt 37611246  T
Q  297 ctataagctctc 308  Q
    | ||||||||||    
T  37611247 ccataagctctc 37611258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 308
Target Start/End: Original strand, 37787877 - 37787988
Alignment:
Q  197 ttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaattt 296  Q
    |||||||||||||||||||| || ||||||| || ||| || | ||||||| ||||||||||||| | ||||||||  || ||||| |||||  | ||||    
T  37787877 ttatttgaacttatctactggcacaagtacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttattt 37787976  T
Q  297 ctataagctctc 308  Q
    | ||||||||||    
T  37787977 ccataagctctc 37787988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 8090077 - 8090004
Alignment:
Q  194 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatga 267  Q
    |||||||||||||||||||||| ||| ||| |||||  |||||  | ||||||| ||||||||||||| |||||    
T  8090077 gacttatttgaacttatctactaacacaagcactcgcgagactatttgagagagcttatgaaaacaacttatga 8090004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 17369354 - 17369316
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataa 222  Q
    |||||| || |||||||||||||||||||||||||||||    
T  17369354 tgtttggattgacttatttgaacttatctactgacataa 17369316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 31208623 - 31208541
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatg 266  Q
    |||||| || |||||||||||||| | ||||||||||||| || ||| |||||| | | ||||||| || |||||||| ||||    
T  31208623 tgtttggattgacttatttgaactgaactactgacataagcacccgtgagactgtttgggagagttcataaaaacaacttatg 31208541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 269
Target Start/End: Original strand, 37112197 - 37112281
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgaca 269  Q
    |||||| || ||||||||||| ||| || |||||||||| || |||| |||||| | | |||| |||||||||||||| |||||||    
T  37112197 tgtttgaatcgacttatttgagcttttccactgacataa-tattcgtgagactgttagggagaatttatgaaaacaacctatgaca 37112281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 22667542 - 22667468
Alignment:
Q  196 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacat 270  Q
    ||||||||| |||||||||||||||||| ||| || |||||| | ||||||||||||| ||||| ||||| ||||    
T  22667542 cttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaacagcatataacat 22667468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 22724181 - 22724107
Alignment:
Q  196 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacat 270  Q
    ||||||||| |||||||||||||||||| ||| || |||||| | ||||||||||||| ||||| ||||| ||||    
T  22724181 cttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaacagcatataacat 22724107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 34610725 - 34610765
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagt 224  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  34610725 tgtttgtatggacttatttgagcttatctactgacataagt 34610765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 2175804 - 2175892
Alignment:
Q  220 taagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctc 308  Q
    |||| ||| ||||||||  | |||| |||||||||||||||| |||||||||| | | ||||| ||||||||  ||||||||| |||||    
T  2175804 taagcacttgtaagactatttgagatagtttatgaaaacaacttatgacatgtttgtaagctgttttcaacttgtttctataaactctc 2175892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 308
Target Start/End: Complemental strand, 37273273 - 37273161
Alignment:
Q  196 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatt 295  Q
    ||||||||||||||| || |  |||||| ||| || |||||| | | ||||| ||||| ||||||| ||||||||||| || || || |||||||| |||    
T  37273273 cttatttgaacttatttattagcataagcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatt 37273174  T
Q  296 tctataagctctc 308  Q
    || ||||| ||||    
T  37273173 tccataagttctc 37273161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 41724350 - 41724274
Alignment:
Q  197 ttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtc 273  Q
    ||||||||||||||||||||||||||||||| || |||| | | | || |  ||||| ||||||| |||||||||||    
T  41724350 ttatttgaacttatctactgacataagtacttgtcagacagtttgtgaaaacttatggaaacaacttatgacatgtc 41724274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 315
Target Start/End: Complemental strand, 31010540 - 31010422
Alignment:
Q  197 ttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaattt 296  Q
    ||||||||||||| ||||| ||||||| ||| || ||  || | | || || ||||  ||||||| ||||||||||| || ||||| ||||| || | ||    
T  31010540 ttatttgaacttaactactaacataagaacttgtgagtgtgtttgtgaaagcttatagaaacaacttatgacatgtccataagctgttttcagcttaatt 31010441  T
Q  297 ctataagctctctatgata 315  Q
    | |||||||||||||||||    
T  31010440 ccataagctctctatgata 31010422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 315
Target Start/End: Original strand, 31710819 - 31710937
Alignment:
Q  197 ttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaattt 296  Q
    |||||||||||||||||| |||||||| ||| || || ||| | | || || |||| |||||||| ||||||||| | || ||||| ||||| || | ||    
T  31710819 ttatttgaacttatctaccgacataagaacttgtgagtctgtttgtgaaagcttataaaaacaacttatgacatgcccatgagctgttttcagcttaatt 31710918  T
Q  297 ctataagctctctatgata 315  Q
    | | |||||||||| ||||    
T  31710919 ccaaaagctctctaagata 31710937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 315
Target Start/End: Original strand, 31711074 - 31711192
Alignment:
Q  197 ttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaattt 296  Q
    |||||||||||||||||| |||||||| ||| || || ||| | | || || |||| |||||||| ||||||||| | || ||||| ||||| || | ||    
T  31711074 ttatttgaacttatctaccgacataagaacttgtgagtctgtttgtgaaagcttataaaaacaacttatgacatgcccatgagctgttttcagcttaatt 31711173  T
Q  297 ctataagctctctatgata 315  Q
    | | |||||||||| ||||    
T  31711174 ccaaaagctctctaagata 31711192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 261
Target Start/End: Complemental strand, 50211875 - 50211809
Alignment:
Q  195 acttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaac 261  Q
    |||||||| | |||||||||| ||||||| ||| ||||||||| | ||||||  |||||||||||||    
T  50211875 acttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaacaac 50211809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 21574582 - 21574517
Alignment:
Q  243 gagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctc 308  Q
    ||||| ||||||||||||| ||||||||||  || ||||||||| | || ||||| ||||||||||    
T  21574582 gagagcttatgaaaacaacttatgacatgttcataagctgcttttagcttatttccataagctctc 21574517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 273
Target Start/End: Complemental strand, 24624349 - 24624272
Alignment:
Q  196 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtc 273  Q
    |||| ||||||||||||||| |||| || ||| ||||||||| | |  |||| ||||||||||| | |||||||||||    
T  24624349 cttagttgaacttatctactcacattagcacttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtc 24624272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 30923883 - 30923948
Alignment:
Q  250 tatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgata 315  Q
    |||| ||||| | |||||||||||||| ||||| ||||| || |||||||||| ||||||| ||||    
T  30923883 tatggaaacagcttatgacatgtctataagctgttttcagcttatttctataaactctctaggata 30923948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 2152161 - 2152221
Alignment:
Q  248 tttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctc 308  Q
    |||||||||||||| ||||||||||   | ||||| ||||||||  |||||||||||||||    
T  2152161 tttatgaaaacaacttatgacatgttcgtaagctgttttcaacttgtttctataagctctc 2152221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 308
Target Start/End: Original strand, 20192525 - 20192649
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgc 283  Q
    |||||| || |||| |||| || ||||||| ||||||||| |||  | | ||||   ||||||| ||||  ||||| | ||||||||||| || |||||     
T  20192525 tgtttggattgactaatttcaatttatctattgacataagcacttcttacactgtatgagagagcttatagaaacagcttatgacatgtccataagctgt 20192624  T
Q  284 tttcaactaatttctataagctctc 308  Q
    |||||||| ||||| ||||||||||    
T  20192625 tttcaactcatttccataagctctc 20192649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 305
Target Start/End: Complemental strand, 4868551 - 4868430
Alignment:
Q  183 ttgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctg 282  Q
    ||||||| || || ||||||||| ||||||| ||||||| | ||| || |||||| | ||||||||||||| ||||||| ||||||||||| || || ||    
T  4868551 ttgtttggattgatttatttgaatttatctattgacataggcacttgtgagactgtttgagagagtttatg-aaacaacttatgacatgtcaataagttg 4868453  T
Q  283 ctttcaactaatttctataagct 305  Q
     |||||||| ||||  |||||||    
T  4868452 ttttcaacttatttacataagct 4868430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 32515374 - 32515491
Alignment:
Q  198 tatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttc 297  Q
    |||||||  ||||||||| ||||||| ||| || |||||| | | ||||| ||||| ||||| | ||||||||||| || || || |||||||| || ||    
T  32515374 tatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgttttcaacttatatc 32515473  T
Q  298 tataagctctctatgata 315  Q
    ||||||||||| ||||||    
T  32515474 tataagctctccatgata 32515491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 310
Target Start/End: Complemental strand, 15581393 - 15581279
Alignment:
Q  196 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatt 295  Q
    ||||||| | |||||||||||||||||| ||| || ||| || | |  |||| | ||| ||||||| |||||||||||||| ||||| ||||| |  |||    
T  15581393 cttattttagcttatctactgacataagcacttgtgagattgtttggaagagctaatggaaacaacttatgacatgtctataagctgttttcagcctatt 15581294  T
Q  296 tctataagctctcta 310  Q
    ||||||||| |||||    
T  15581293 tctataagccctcta 15581279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 27807256 - 27807194
Alignment:
Q  194 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaa 256  Q
    ||||||||||||||| |||||||||||||| | | ||||||||| | ||||||| ||||||||    
T  27807256 gacttatttgaacttttctactgacataagcatttgtaagactgtttgagagagcttatgaaa 27807194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 315
Target Start/End: Complemental strand, 15515636 - 15515561
Alignment:
Q  240 cgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgata 315  Q
    |||||||||||||||||||||| ||||||||||| ||  |||  |||||| | ||||| ||||||| || ||||||    
T  15515636 cgagagagtttatgaaaacaacttatgacatgtcaatacgctattttcaatttatttccataagctatccatgata 15515561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 23373232 - 23373321
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtc 273  Q
    |||||| || ||||||||||||||| |||||||| ||||| ||| || ||| || | | ||||| ||||  ||||||| |||||||||||    
T  23373232 tgtttgaattgacttatttgaacttgtctactgatataagcacttgtgagattgtttgggagagcttatagaaacaacttatgacatgtc 23373321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 24460320 - 24460373
Alignment:
Q  184 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactg 237  Q
    |||||| || ||||||||||||||||||||||||||| || ||| || ||||||    
T  24460320 tgtttggattgacttatttgaacttatctactgacatgagcacttgtgagactg 24460373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 6292644 - 6292604
Alignment:
Q  183 ttgtttgtatggacttatttgaacttatctactgacataag 223  Q
    ||||||| || ||||||||||| ||||||||||||||||||    
T  6292644 ttgtttggattgacttatttgagcttatctactgacataag 6292604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 16980944 - 16980868
Alignment:
Q  194 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacat 270  Q
    ||||||||||||||||| |||  ||||||||||| || |||||  | ||||||| ||||| ||||||| || |||||    
T  16980944 gacttatttgaacttatataccaacataagtacttgtgagactatttgagagagcttatggaaacaacttacgacat 16980868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 29793619 - 29793655
Alignment:
Q  186 tttgtatggacttatttgaacttatctactgacataa 222  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  29793619 tttgtattgacttatttgagcttatctactgacataa 29793655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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