View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_low_41 (Length: 299)
Name: NF1247_low_41
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 97 - 217
Target Start/End: Complemental strand, 17493180 - 17493060
Alignment:
| Q |
97 |
taggtaccataggataaaaagcttaccaatagaaaaatggttgagtactttggctatcaaaccaaatatcataatataagtgcaaattgtgtccatagcg |
196 |
Q |
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| T |
17493180 |
taggtaccataggataaaaagcttaccaatagaaaaatggttgagtactttggctatcaaaccaaatatcataatataagtgcaaattgtgtccatagcg |
17493081 |
T |
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| Q |
197 |
atgacgtgggtcaatctgtgg |
217 |
Q |
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| T |
17493080 |
atgacgtgggtcaatctgtgg |
17493060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 42816936 - 42817031
Alignment:
| Q |
119 |
ttaccaatagaaaaatggttgagtactttggctatcaaaccaaatatcataatataagtgcaaattgtgtccatagcgatgacgtgggtcaatctg |
214 |
Q |
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| T |
42816936 |
ttaccagtagaaaaagggttgagaactctgacacttaaaccatacatcataatagaaatgcagattgtgtccatagcgatgacgaggatcaatctg |
42817031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 6005203 - 6005298
Alignment:
| Q |
119 |
ttaccaatagaaaaatggttgagtactttggctatcaaaccaaatatcataatataagtgcaaattgtgtccatagcgatgacgtgggtcaatctg |
214 |
Q |
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| T |
6005203 |
ttaccagtagaaaaaaggttgtgagctctggctatggaaccaaacattatagtacaagtgtaaattgtgtccatatcgatgacgtggatcaatctg |
6005298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 52368578 - 52368672
Alignment:
| Q |
119 |
ttaccaatagaaaaatggttgagtactttggctatcaaaccaaatatcataatataagtgcaaattgtgtccatagcgatgacgtgggtcaatct |
213 |
Q |
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| T |
52368578 |
ttaccagtagaaaaatggttgtgtgcttaagcttttaaaccagatatcataatacatatgaagattgtgtccatatcgatgacgcgggtcaatct |
52368672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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