View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_low_42 (Length: 285)
Name: NF1247_low_42
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 3144480 - 3144241
Alignment:
| Q |
17 |
atgaatgcagttaataatgttagttggtgaatgaagtcagaaataatagagaaagtgaagaagagagagtaatggtcgccgccttatttgcttaaaacca |
116 |
Q |
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| T |
3144480 |
atgaatgcagttaataatgtaagttggtgaatgaagtcagaaataatagagaaagtgaagaagagagagtaatggtcgccgccttatttgcttaaaacta |
3144381 |
T |
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| Q |
117 |
agtccaagatgagttaagattatggttggggcgcaaatctcaaaagagtgaatgagagaggtctgtactctgtggtctctgctgtttctttctttctatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3144380 |
agtccaagatgagttaagattatggttggggcgcaaatctcaaaagagtgaatgagagaggtctgtactctgtggtctctgctgtttctttctttctatt |
3144281 |
T |
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| Q |
217 |
ctctattctgagccaaacacactttctctgccaacttaat |
256 |
Q |
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| T |
3144280 |
ctctattctgagccaaacacactttctctgccaacttaat |
3144241 |
T |
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