View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_low_44 (Length: 276)
Name: NF1247_low_44
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 30 - 267
Target Start/End: Complemental strand, 2478251 - 2478014
Alignment:
| Q |
30 |
aatagaccatttatttaaattagttacttaacttaaaaattggannnnnnnnaatgacaaaatatctgaaatttacaattnnnnnnncgaatatggataa |
129 |
Q |
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| T |
2478251 |
aatagaccatttatttaaattagttacttaacttaaaaattggattttttttaatgacaaaatatctgaaatttacaattaaagaaacgaatatggataa |
2478152 |
T |
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| Q |
130 |
ttcaatgaattcaaagannnnnnnnggcataatttaatatcaaaaaatgtacatgaatatttcaatagtaaaaaatatcactttattttttaccnnnnnn |
229 |
Q |
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| T |
2478151 |
ttcaatgtattcaaagattttttttggcataatttaatatcagaaaatgtacatgaatatttcaatagtaaaaaatatcactttattttttaccaaaaaa |
2478052 |
T |
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| Q |
230 |
nnnntagcactttattttttaccaaaaactagtataat |
267 |
Q |
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| T |
2478051 |
aaaatagcactttattttttaccaaaaaatagtataat |
2478014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 2481074 - 2481007
Alignment:
| Q |
155 |
ggcataatttaatatcaaaaaatgtacatgaatatttcaatagtaaaaaatatcactttattttttacc |
223 |
Q |
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||||||||| ||||| |||||||||||||||| ||||||||| | ||||||| ||||||||||||||| |
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| T |
2481074 |
ggcataattcaatataaaaaaatgtacatgaaaatttcaataat-aaaaataatactttattttttacc |
2481007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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