View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_low_46 (Length: 275)
Name: NF1247_low_46
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 16802690 - 16802948
Alignment:
| Q |
1 |
caataggttatacgttagacattaatcttaaacatcacaaccaggaaaataatactcctttaacaataaaaatcttaaacaaaaattatttgaatatgtt |
100 |
Q |
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| T |
16802690 |
caataggttatacgttagacattaatcttaaacatcacaaccaggaaaagaatactcctttaacaataaaaatcttaaacaaaaattatttgaatatgtt |
16802789 |
T |
|
| Q |
101 |
atttttcaaacagatagaaataaacttgatcaaacacaaataaaatgtaaatatatcatcatggaacgaaaatgaatttattattaattatttcataaat |
200 |
Q |
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| T |
16802790 |
atttttcaaacagatagaaataaacttgatcaaacacaaataaaatataaatatatcatcatggaacgaaaatgaatttattattaattatttcataaat |
16802889 |
T |
|
| Q |
201 |
caccaaaattaagaataaattaacttttggtacaatctgtgggcttaaaggagataata |
259 |
Q |
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| T |
16802890 |
caccaaaattaagaataaattaacttttggtacaatctgtgggcttaaaggagataata |
16802948 |
T |
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