View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_low_52 (Length: 263)
Name: NF1247_low_52
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_52 |
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| [»] scaffold1572 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 41 - 240
Target Start/End: Original strand, 21319180 - 21319379
Alignment:
| Q |
41 |
ataacttacggtgtttataacttactgtgatttctgatatttttgcacttcatttttctgtataaacctttctgatgtgtactgtttttgctacttcagt |
140 |
Q |
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| T |
21319180 |
ataacttacgttgtttataacttactgtgatttctgatatttttgcacttcatttttctatataaacctttctgacgtgtactgtttttgctacttcagt |
21319279 |
T |
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| Q |
141 |
ccatgcagctgggagagtaatttgaaagttgtcagttatagctactgagattttggataggactctttataattgctggaggtatttgttcttctgatat |
240 |
Q |
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| T |
21319280 |
ccatgcagctgggagagtaatttgaaagttgccagttatagctactgagattttggataggactctttataattgctggaggtatttgttcttctgatat |
21319379 |
T |
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Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 37963803 - 37963959
Alignment:
| Q |
67 |
gtgatttctgatatttttgcacttcatttttctgtataaacctttctgatgtgtactgtttttgctacttcagtccatgcagctgggagagtaatttgaa |
166 |
Q |
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| T |
37963803 |
gtgatttctgatatttttgcacttcatttttctgtataaatct--ctggcgtgta----ttttgctacttcagtccatgcagttgggggagtaatttgaa |
37963896 |
T |
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| Q |
167 |
agttgtcagttatagctactgagattttggataggactctttataattgctggaggtatttgttct |
232 |
Q |
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| T |
37963897 |
agttgtca-ttatagcttctgagattttggataggactc--tataattgctggaggtaattgttct |
37963959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold1572
Description:
Target: scaffold1572; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 67 - 225
Target Start/End: Complemental strand, 998 - 844
Alignment:
| Q |
67 |
gtgatttctgatatttttgcacttcatttttctgtataaacctttctgatgtgtactgtttttgctacttcagtccatgcagctgggagagtaatttgaa |
166 |
Q |
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| T |
998 |
gtgatttctgatatttttgcaa---acttttctgtataaatctttctagcgtatactgtttttgctacttcagtccgtgcagttgtgggagtaatttgaa |
902 |
T |
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| Q |
167 |
agttgtcagttatagctactgagattttggataggactctttataattgctggaggtat |
225 |
Q |
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| T |
901 |
agttgttagttatagctactgagattttggataggactcttcat-attgctggaggtat |
844 |
T |
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