View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1247_low_54 (Length: 253)

Name: NF1247_low_54
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1247_low_54
NF1247_low_54
[»] chr2 (9 HSPs)
chr2 (16-162)||(15580698-15580844)
chr2 (189-246)||(15580617-15580674)
chr2 (201-239)||(39373217-39373255)
chr2 (202-238)||(42223271-42223307)
chr2 (204-246)||(11915102-11915144)
chr2 (201-238)||(17188733-17188770)
chr2 (201-238)||(31989568-31989605)
chr2 (201-237)||(11755804-11755840)
chr2 (28-124)||(18472607-18472702)
[»] chr7 (8 HSPs)
chr7 (189-237)||(14675586-14675634)
chr7 (202-246)||(15011882-15011926)
chr7 (201-238)||(1853344-1853381)
chr7 (201-246)||(2300903-2300947)
chr7 (202-235)||(15012018-15012051)
chr7 (201-246)||(17051897-17051942)
chr7 (201-246)||(35158264-35158308)
chr7 (201-237)||(41380644-41380680)
[»] chr4 (9 HSPs)
chr4 (204-238)||(25786354-25786388)
chr4 (202-238)||(5283846-5283882)
chr4 (201-246)||(5114138-5114183)
chr4 (201-234)||(29172756-29172789)
chr4 (201-246)||(49277870-49277915)
chr4 (189-237)||(8810125-8810173)
chr4 (202-246)||(9780537-9780581)
chr4 (201-237)||(16589236-16589272)
chr4 (202-238)||(16734297-16734333)
[»] chr8 (8 HSPs)
chr8 (205-246)||(28786510-28786551)
chr8 (202-237)||(13980023-13980058)
chr8 (201-239)||(25653786-25653824)
chr8 (201-246)||(9305656-9305700)
chr8 (202-238)||(9235533-9235569)
chr8 (201-237)||(10761679-10761715)
chr8 (191-235)||(13085256-13085300)
chr8 (202-234)||(13373258-13373290)
[»] chr3 (4 HSPs)
chr3 (200-237)||(30226316-30226353)
chr3 (201-247)||(5572202-5572247)
chr3 (201-239)||(48689328-48689366)
chr3 (191-243)||(1347661-1347713)
[»] chr6 (6 HSPs)
chr6 (205-245)||(854173-854213)
chr6 (202-237)||(9662933-9662968)
chr6 (202-236)||(18274361-18274395)
chr6 (201-238)||(9044645-9044682)
chr6 (202-246)||(3816694-3816738)
chr6 (202-242)||(33200009-33200049)
[»] chr5 (8 HSPs)
chr5 (189-237)||(17668797-17668845)
chr5 (202-246)||(18232009-18232053)
chr5 (201-237)||(37869557-37869593)
chr5 (191-246)||(20355086-20355140)
chr5 (190-237)||(38083061-38083108)
chr5 (201-246)||(28796428-28796472)
chr5 (202-238)||(20355260-20355296)
chr5 (202-238)||(21144041-21144077)
[»] chr1 (11 HSPs)
chr1 (202-246)||(9240549-9240593)
chr1 (202-246)||(33864133-33864177)
chr1 (202-246)||(33916745-33916789)
chr1 (190-245)||(25060040-25060094)
chr1 (201-239)||(19967818-19967856)
chr1 (201-234)||(15654067-15654100)
chr1 (201-238)||(16421138-16421175)
chr1 (201-246)||(23161907-23161951)
chr1 (201-246)||(44961087-44961131)
chr1 (202-238)||(22315228-22315264)
chr1 (202-246)||(44228357-44228401)
[»] scaffold0003 (1 HSPs)
scaffold0003 (201-238)||(306723-306760)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 15580844 - 15580698
Alignment:
Q  16 atagagacgtataagtttcgatttgtgtgctacgaaggaatgttattccttcctaacaaattaactaccgtaaatttgcgtttaaaaattaattttgaat 115  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  15580844 atagagacgtctaagtttcgatttttgtgctacgaaggaatgttattccttcctaacaaattaactatcgtaaatttgcatttaaaaattaattttgaat 15580745  T
Q  116 aaacttaaaattatgtaagatattaagaaaaggattcatatatgtta 162  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||    
T  15580744 aaacttaaaattatataagatattaagaaaagggttcatatatgtta 15580698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 15580674 - 15580617
Alignment:
Q  189 aagatttcaatattgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    ||||||||||| |||||||||||||||| |||||||||| ||||||||| ||||||||    
T  15580674 aagatttcaatcttgtaatttgaagattttttgattttggaccttcatgaattttgac 15580617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 39373255 - 39373217
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatgga 239  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  39373255 ttgtaatttgaagattttttgattttgaaccttcatgga 39373217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 42223307 - 42223271
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcatgg 238  Q
    ||||||||||||||| |||||||||||||||||||||    
T  42223307 tgtaatttgaagattttttgattttgaaccttcatgg 42223271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 11915102 - 11915144
Alignment:
Q  204 taatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    |||||||||||||||||| ||||| |||||||| |||||||||    
T  11915102 taatttgaagattctttggttttggaccttcatagattttgac 11915144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 17188733 - 17188770
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatgg 238  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  17188733 ttgtaatttgaagattttttgattttggaccttcatgg 17188770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 31989605 - 31989568
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatgg 238  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  31989605 ttgtaatttgaagattctttggttttggaccttcatgg 31989568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 11755804 - 11755840
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatg 237  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  11755804 ttgtaatttaaagattttttgattttgaaccttcatg 11755840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 18472607 - 18472702
Alignment:
Q  28 aagtttcgatttgtgtgctacgaaggaatgttattccttcctaacaaattaactaccgtaaatttgcgtttaaaaattaattttgaataaacttaaa 124  Q
    |||||| |||||||||| ||| ||  ||| | |||||| ||||||||| ||||||  | |||||||| | ||||||||  |||||||||||||||||    
T  18472607 aagttttgatttgtgtgttactaacaaatctcattcct-cctaacaaaataactattgcaaatttgcctctaaaaattgtttttgaataaacttaaa 18472702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 14675586 - 14675634
Alignment:
Q  189 aagatttcaatattgtaatttgaagattctttgattttgaaccttcatg 237  Q
    |||||||||| |||||||||||||||||||||||||||| || ||||||    
T  14675586 aagatttcaacattgtaatttgaagattctttgattttggactttcatg 14675634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 15011882 - 15011926
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    |||||||||||||||||||| |||||||||| |||| ||||||||    
T  15011882 tgtaatttgaagattctttggttttgaacctgcatgaattttgac 15011926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 1853381 - 1853344
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatgg 238  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  1853381 ttgtaatttgaagattttttgattttggaccttcatgg 1853344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 2300903 - 2300947
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    ||||||||||||||||| ||||||||| ||||||||| ||||||||    
T  2300903 ttgtaatttgaagattc-ttgattttggaccttcatgaattttgac 2300947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 15012051 - 15012018
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttca 235  Q
    ||||||||||||||||||||||||||||| ||||    
T  15012051 tgtaatttgaagattctttgattttgaacattca 15012018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 17051897 - 17051942
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    |||||||||||| ||| |||||||||| ||||||||| ||||||||    
T  17051897 ttgtaatttgaatattttttgattttggaccttcatgaattttgac 17051942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 35158264 - 35158308
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    |||||||||||||||| |||||||||| ||||||||| ||||||||    
T  35158264 ttgtaatttgaagatt-tttgattttggaccttcatgaattttgac 35158308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 41380680 - 41380644
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatg 237  Q
    |||||||||||||||| |||| |||||||||||||||    
T  41380680 ttgtaatttgaagattttttgcttttgaaccttcatg 41380644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 25786388 - 25786354
Alignment:
Q  204 taatttgaagattctttgattttgaaccttcatgg 238  Q
    |||||||||||||||||||||||||||||||||||    
T  25786388 taatttgaagattctttgattttgaaccttcatgg 25786354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 5283882 - 5283846
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcatgg 238  Q
    ||||||||||||||| |||||||||||||||||||||    
T  5283882 tgtaatttgaagattttttgattttgaaccttcatgg 5283846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 5114138 - 5114183
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    |||||||||||||||| |||| |||||||| |||||| ||||||||    
T  5114138 ttgtaatttgaagattttttggttttgaacattcatgaattttgac 5114183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 29172789 - 29172756
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttc 234  Q
    ||||||||||||||||||||| ||||||||||||    
T  29172789 ttgtaatttgaagattctttggttttgaaccttc 29172756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 49277915 - 49277870
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    |||||||||||||||| |||| ||||||||||||||  ||||||||    
T  49277915 ttgtaatttgaagattatttggttttgaaccttcataaattttgac 49277870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 8810173 - 8810125
Alignment:
Q  189 aagatttcaatattgtaatttgaagattctttgattttgaaccttcatg 237  Q
    ||||||||||  |||||||||||||||| ||| |||||| |||||||||    
T  8810173 aagatttcaaccttgtaatttgaagatttttttattttggaccttcatg 8810125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 9780581 - 9780537
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    ||||||||||||||| |||| ||||| ||||||||| ||||||||    
T  9780581 tgtaatttgaagattatttggttttggaccttcatgaattttgac 9780537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 16589272 - 16589236
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatg 237  Q
    |||||||||||||||| |||||||||| |||||||||    
T  16589272 ttgtaatttgaagattttttgattttggaccttcatg 16589236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 16734333 - 16734297
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcatgg 238  Q
    |||||||||||||||||||||||||  ||||||||||    
T  16734333 tgtaatttgaagattctttgattttagaccttcatgg 16734297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 28786551 - 28786510
Alignment:
Q  205 aatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    ||||||||||||||||||||||| ||||||||| ||||||||    
T  28786551 aatttgaagattctttgattttggaccttcatgaattttgac 28786510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 237
Target Start/End: Complemental strand, 13980058 - 13980023
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcatg 237  Q
    |||||||||||||||||||||||||| |||||||||    
T  13980058 tgtaatttgaagattctttgattttggaccttcatg 13980023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 25653786 - 25653824
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatgga 239  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  25653786 ttgtaatttgaagattttttgattttggaccttcatgga 25653824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 9305700 - 9305656
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    |||||||||||||||| |||| ||||||||||||||| ||||||||    
T  9305700 ttgtaatttgaagatt-tttggttttgaaccttcatgaattttgac 9305656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 9235569 - 9235533
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcatgg 238  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  9235569 tgtaatttgaagattttttgattttggaccttcatgg 9235533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 10761715 - 10761679
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatg 237  Q
    |||||||||||||||| |||||||||| |||||||||    
T  10761715 ttgtaatttgaagattttttgattttggaccttcatg 10761679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 13085300 - 13085256
Alignment:
Q  191 gatttcaatattgtaatttgaagattctttgattttgaaccttca 235  Q
    ||||||||  ||||||||||||||||||||| |||| ||||||||    
T  13085300 gatttcaaccttgtaatttgaagattctttggttttaaaccttca 13085256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 13373258 - 13373290
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttc 234  Q
    |||||||||||||||||||| ||||||||||||    
T  13373258 tgtaatttgaagattctttggttttgaaccttc 13373290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 30226353 - 30226316
Alignment:
Q  200 attgtaatttgaagattctttgattttgaaccttcatg 237  Q
    |||||||||||||||||||||||||||| |||||||||    
T  30226353 attgtaatttgaagattctttgattttggaccttcatg 30226316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 5572247 - 5572202
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatggattttgaca 247  Q
    |||||||||||||||| |||||||||| ||||||||| |||||||||    
T  5572247 ttgtaatttgaagatt-tttgattttggaccttcatgaattttgaca 5572202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 48689366 - 48689328
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatgga 239  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  48689366 ttgtaatttgaagattttttgattttggaccttcatgga 48689328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 1347661 - 1347713
Alignment:
Q  191 gatttcaatattgtaatttgaagattctttgattttgaaccttcatggatttt 243  Q
    ||||||||  |||||||||||| |||||||||||||| |||||| || |||||    
T  1347661 gatttcaaccttgtaatttgaatattctttgattttggaccttcgtgaatttt 1347713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 854213 - 854173
Alignment:
Q  205 aatttgaagattctttgattttgaaccttcatggattttga 245  Q
    |||||||||||||||||||||||||| |||||| |||||||    
T  854213 aatttgaagattctttgattttgaacattcatgaattttga 854173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 237
Target Start/End: Complemental strand, 9662968 - 9662933
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcatg 237  Q
    ||||||||||||||| ||||||||||||||||||||    
T  9662968 tgtaatttgaagattttttgattttgaaccttcatg 9662933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 18274395 - 18274361
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcat 236  Q
    ||||||||||||||||||||||||||||| |||||    
T  18274395 tgtaatttgaagattctttgattttgaactttcat 18274361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 9044682 - 9044645
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatgg 238  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  9044682 ttgtaatttgaagattatttgattttggaccttcatgg 9044645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 3816738 - 3816694
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    |||||||||||||||||||| ||||  |||||||||| |||||||    
T  3816738 tgtaatttgaagattctttggtttttgaccttcatgggttttgac 3816694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 33200049 - 33200009
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcatggattt 242  Q
    |||||||||||||||||||||||||| ||||| ||| ||||    
T  33200049 tgtaatttgaagattctttgattttggacctttatgaattt 33200009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 17668845 - 17668797
Alignment:
Q  189 aagatttcaatattgtaatttgaagattctttgattttgaaccttcatg 237  Q
    |||||||||| |||||||||| ||||||||||||||||| || ||||||    
T  17668845 aagatttcaacattgtaatttaaagattctttgattttggactttcatg 17668797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 18232053 - 18232009
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    |||||||| ||||||||||| ||||||||||||||| ||||||||    
T  18232053 tgtaatttaaagattctttggttttgaaccttcatgaattttgac 18232009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 37869593 - 37869557
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatg 237  Q
    ||||||||||||||||||||||||||| |||||||||    
T  37869593 ttgtaatttgaagattctttgattttggaccttcatg 37869557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 20355086 - 20355140
Alignment:
Q  191 gatttcaatattgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    |||||||| | ||||||||||||||| |||| ||||||||||||||| ||||||||    
T  20355086 gatttcaacactgtaatttgaagatt-tttggttttgaaccttcatgaattttgac 20355140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 38083108 - 38083061
Alignment:
Q  190 agatttcaatattgtaatttgaagattctttgattttgaaccttcatg 237  Q
    ||||||||| |  ||||||||||||||||||||||||| |||||||||    
T  38083108 agatttcaacacagtaatttgaagattctttgattttggaccttcatg 38083061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 28796428 - 28796472
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    |||||||||||||||| |||| ||||||||||||||| ||||||||    
T  28796428 ttgtaatttgaagatt-tttggttttgaaccttcatgaattttgac 28796472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 20355296 - 20355260
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcatgg 238  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  20355296 tgtaatttgaagattttttgattttgaaccttgatgg 20355260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 21144041 - 21144077
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcatgg 238  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  21144041 tgtaatttgaagattttttgattttggaccttcatgg 21144077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 9240549 - 9240593
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||    
T  9240549 tgtaatttgaagattctttgattttggacctttatgaattttgac 9240593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 33864133 - 33864177
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||||    
T  33864133 tgtaatttgaagattctttggttttgaatcttcatgaattttgac 33864177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 33916789 - 33916745
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||||    
T  33916789 tgtaatttgaagattctttggttttgaatcttcatgaattttgac 33916745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 25060094 - 25060040
Alignment:
Q  190 agatttcaatattgtaatttgaagattctttgattttgaaccttcatggattttga 245  Q
    |||||||||| |||||||||||||||| |||  ||||||||||||||| |||||||    
T  25060094 agatttcaattttgtaatttgaagatt-tttagttttgaaccttcatgaattttga 25060040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 19967856 - 19967818
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatgga 239  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  19967856 ttgtaatttgaagattttttgattttggaccttcatgga 19967818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 15654067 - 15654100
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttc 234  Q
    |||||||||||| |||||||||||||||||||||    
T  15654067 ttgtaatttgaaaattctttgattttgaaccttc 15654100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 16421175 - 16421138
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatgg 238  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  16421175 ttgtaatttgaagattttttggttttgaaccttcatgg 16421138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 23161907 - 23161951
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    |||||||||||||||| |||||||||| ||||||||| ||||||||    
T  23161907 ttgtaatttgaagatt-tttgattttggaccttcatgaattttgac 23161951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 44961087 - 44961131
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    |||||||||||||||| ||| |||||| ||||||||||||||||||    
T  44961087 ttgtaatttgaagatttttt-attttggaccttcatggattttgac 44961131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 22315228 - 22315264
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcatgg 238  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  22315228 tgtaatttgaagattttttgattttggaccttcatgg 22315264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 44228357 - 44228401
Alignment:
Q  202 tgtaatttgaagattctttgattttgaaccttcatggattttgac 246  Q
    |||||||| ||||||||||| ||||| ||||||||| ||||||||    
T  44228357 tgtaatttaaagattctttggttttggaccttcatgaattttgac 44228401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 306760 - 306723
Alignment:
Q  201 ttgtaatttgaagattctttgattttgaaccttcatgg 238  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  306760 ttgtaatttgaagattctttggttttggaccttcatgg 306723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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