View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_low_60 (Length: 251)
Name: NF1247_low_60
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 247
Target Start/End: Original strand, 15815673 - 15815930
Alignment:
| Q |
2 |
taacgttggatcggtatgatgtgttgtttgttttttctgttgaattctggcaaaaatttaacatgtaatatggtgattgtgcatttgttaaggtgaagag |
101 |
Q |
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| T |
15815673 |
taacgttggatcggtatgatgtgttgtttgttttttctgttgaattctggcaaaaatttaacctgtaatatggtgattgtgcatttgttaaggtgaagag |
15815772 |
T |
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| Q |
102 |
aaaaat------------gaagcttagaaaccttgtagtacaagtcatgttcatttgtgacatgtttatggttaagtttttactttcaactattttcaaa |
189 |
Q |
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| T |
15815773 |
aaaaatatgaagtagaatgaagcttagaaaccttgcagtacaagtcatgttcatttgtgacatgtttatggttaagtttttactttcaactatttcccaa |
15815872 |
T |
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| Q |
190 |
aatagtagggagacatatatgtatgttaacagaaaagtttatgtattctgtggtgctg |
247 |
Q |
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| T |
15815873 |
aacagtagggagacatatatgtatgttaacagaaaagtttatgtattctgtgctgctg |
15815930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 15802180 - 15802270
Alignment:
| Q |
1 |
ttaacgttggatcggtatgatgtgttgtttgttttttctgttgaattctggcaaaaatttaacatgtaatatggtgattgtgcatttgtta |
91 |
Q |
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| T |
15802180 |
ttaacgttggattggtatgaagtgttaagtgttttttctgttgaattctcgcaaatactgtacaagtaaaatggtgattgtgcagttgtta |
15802270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 15802297 - 15802334
Alignment:
| Q |
103 |
aaaatgaagcttagaaaccttgtagtacaagtcatgtt |
140 |
Q |
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| T |
15802297 |
aaaatgaagcttagaaaccttgtagtacaagtcatgtt |
15802334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 15807918 - 15807953
Alignment:
| Q |
105 |
aatgaagcttagaaaccttgtagtacaagtcatgtt |
140 |
Q |
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| T |
15807918 |
aatgaagcttagaaaccttgtagtacaagtcatgtt |
15807953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 15807799 - 15807889
Alignment:
| Q |
1 |
ttaacgttggatcggtatgatgtgttgtttgttttttctgttgaattctggcaaaaatttaacatgtaatatggtgattgtgcatttgtta |
91 |
Q |
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| T |
15807799 |
ttaacgttggattgatatgaagtgttgactgttttttcagtagaattctggcaataactgtacatgtaaaatggtgattgcgcattcgtta |
15807889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 15794500 - 15794535
Alignment:
| Q |
105 |
aatgaagcttagaaaccttgtagtacaagtcatgtt |
140 |
Q |
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| T |
15794500 |
aatgaagcttagaaaccttgtagtataagtcatgtt |
15794535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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