View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1247_low_61 (Length: 245)

Name: NF1247_low_61
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1247_low_61
NF1247_low_61
[»] chr7 (2 HSPs)
chr7 (67-162)||(42452817-42452912)
chr7 (67-161)||(41594389-41594483)
[»] chr5 (2 HSPs)
chr5 (68-161)||(23123458-23123551)
chr5 (67-161)||(14007250-14007344)
[»] chr2 (1 HSPs)
chr2 (67-161)||(43522996-43523090)
[»] chr3 (1 HSPs)
chr3 (68-161)||(22511998-22512091)
[»] chr8 (1 HSPs)
chr8 (67-161)||(12869292-12869386)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 42452912 - 42452817
Alignment:
Q  67 tgaacatcaacaggttgagatgtagaagttatcacttcttcgattctgagaactttaacaggatgagatggaagagtcattccttatttatctctg 162  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  42452912 tgaacatcaacaggttgagatgtagaagttatcacttcttcaattctgagaactttaacaggatgagatggaagagtcattccttgttcatctctg 42452817  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 41594483 - 41594389
Alignment:
Q  67 tgaacatcaacaggttgagatgtagaagttatcacttcttcgattctgagaactttaacaggatgagatggaagagtcattccttatttatctct 161  Q
    |||||||||||||||||||   ||  ||||||  ||||||| |||||  ||||||||| ||| ||||||||| |||||||||||| || ||||||    
T  41594483 tgaacatcaacaggttgagtcatatgagttatgtcttcttcaattcttggaactttaataggttgagatggaggagtcattccttgttcatctct 41594389  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 161
Target Start/End: Original strand, 23123458 - 23123551
Alignment:
Q  68 gaacatcaacaggttgagatgtagaagttatcacttcttcgattctgagaactttaacaggatgagatggaagagtcattccttatttatctct 161  Q
    ||||||||| |||||||||||||||||||||||||||||| ||| ||  |||||||||||| ||||||||| |||||||||||| || ||||||    
T  23123458 gaacatcaataggttgagatgtagaagttatcacttcttcaattatggaaactttaacaggttgagatggaggagtcattccttgttcatctct 23123551  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 14007344 - 14007250
Alignment:
Q  67 tgaacatcaacaggttgagatgtagaagttatcacttcttcgattctgagaactttaacaggatgagatggaagagtcattccttatttatctct 161  Q
    |||||||||||||||||||   ||  ||||||  ||||||| |||||  ||||||||| ||| ||||||||| |||||||||||| || ||||||    
T  14007344 tgaacatcaacaggttgagtcatatgagttatgtcttcttcaattcttggaactttaataggttgagatggaggagtcattccttgttcatctct 14007250  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 43523090 - 43522996
Alignment:
Q  67 tgaacatcaacaggttgagatgtagaagttatcacttcttcgattctgagaactttaacaggatgagatggaagagtcattccttatttatctct 161  Q
    |||||||||||||||||||   ||  ||||||  ||||||| |||||  ||||||||| ||| ||||||||| |||||||||||| || ||||||    
T  43523090 tgaacatcaacaggttgagtcatatgagttatgtcttcttcaattcttggaactttaataggttgagatggaggagtcattccttgttcatctct 43522996  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 161
Target Start/End: Original strand, 22511998 - 22512091
Alignment:
Q  68 gaacatcaacaggttgagatgtagaagttatcacttcttcgattctgagaactttaacaggatgagatggaagagtcattccttatttatctct 161  Q
    ||||||||||||||||||   ||  ||||||  ||||||| ||||   ||||||||||||| ||||||||| |||||||||||| || ||||||    
T  22511998 gaacatcaacaggttgagtcatatgagttatgtcttcttcaattcatggaactttaacaggttgagatggaggagtcattccttgttcatctct 22512091  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 12869292 - 12869386
Alignment:
Q  67 tgaacatcaacaggttgagatgtagaagttatcacttcttcgattctgagaactttaacaggatgagatggaagagtcattccttatttatctct 161  Q
    |||||||||||||||||||   ||  ||||||  ||||||| |||||   |||||||| ||| ||||||||| |||||||||||| || ||||||    
T  12869292 tgaacatcaacaggttgagtcatatgagttatgtcttcttcaattcttgaaactttaataggttgagatggaggagtcattccttgttcatctct 12869386  T

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