View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_low_63 (Length: 241)
Name: NF1247_low_63
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 216
Target Start/End: Original strand, 13370594 - 13370804
Alignment:
| Q |
6 |
ttctgtttgtttaccacgtgtctgaaccttcaaacttgcctcttctgagagaattcaaagtctttcaaaggcttctccagtcgaaaactgcatcttctct |
105 |
Q |
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| T |
13370594 |
ttctgtttgtttaccacgtgtctgaaccttcaaacttgcctcttctgagagaattcaaagtcttttaaaggcttctccagtcgaaaactgcatcttctct |
13370693 |
T |
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| Q |
106 |
gatcgaagtcttcatcagtcaaagtcttcacctgtcgaagtccttccttgtcgaaacccacattttctctttggacttagaaaatcctgcaatcttgtat |
205 |
Q |
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| T |
13370694 |
ggtcgaagtcttcatcagtcaaagtcttcacatgtcgaagtccttccttgtcgaaacccacattttctctttggacttagaaaatcctgcaatcttgtat |
13370793 |
T |
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| Q |
206 |
ttttcttttct |
216 |
Q |
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||||||||||| |
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| T |
13370794 |
ttttcttttct |
13370804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 22969800 - 22969721
Alignment:
| Q |
13 |
tgtttaccacgtgtctgaaccttcaaacttgcctcttctgagagaattcaaagtctttcaaaggcttctccagtcgaaaac |
93 |
Q |
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| T |
22969800 |
tgttttccacatgtctgaaccttcaaacttgccttttcagcaagaattcaaagtc-tacaaaggtttctctagtcaaaaac |
22969721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 21880825 - 21880904
Alignment:
| Q |
13 |
tgtttaccacgtgtctgaaccttcaaacttgcctcttctgagagaattcaaagtctttcaaaggcttctccagtcgaaaac |
93 |
Q |
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| T |
21880825 |
tgttttccacatgtctgaaccttcaaacttgccttttcagcaagaattcaaagtc-tacaaaggtttctctagtcaaaaac |
21880904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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