View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1247_low_64 (Length: 239)

Name: NF1247_low_64
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1247_low_64
NF1247_low_64
[»] chr5 (22 HSPs)
chr5 (8-221)||(16802436-16802649)
chr5 (87-187)||(16439164-16439264)
chr5 (77-187)||(3180062-3180172)
chr5 (102-198)||(3899854-3899950)
chr5 (102-198)||(16971159-16971255)
chr5 (102-214)||(28818916-28819028)
chr5 (102-187)||(19655184-19655269)
chr5 (102-187)||(29699393-29699478)
chr5 (102-187)||(291123-291208)
chr5 (102-214)||(26662398-26662511)
chr5 (102-214)||(26933993-26934106)
chr5 (87-187)||(19598358-19598457)
chr5 (102-187)||(12913829-12913914)
chr5 (113-198)||(38134411-38134496)
chr5 (102-198)||(2093964-2094060)
chr5 (73-171)||(2935825-2935926)
chr5 (102-162)||(2953241-2953301)
chr5 (151-214)||(3180059-3180122)
chr5 (149-186)||(1638484-1638521)
chr5 (151-187)||(2953266-2953302)
chr5 (152-216)||(16802521-16802585)
chr5 (151-187)||(29699443-29699479)
[»] scaffold0047 (2 HSPs)
scaffold0047 (87-198)||(63772-63883)
scaffold0047 (151-196)||(63833-63878)
[»] chr1 (42 HSPs)
chr1 (77-198)||(8337854-8337974)
chr1 (72-187)||(4609022-4609137)
chr1 (102-198)||(29371383-29371479)
chr1 (92-198)||(34062224-34062330)
chr1 (74-183)||(9157340-9157449)
chr1 (77-192)||(741504-741619)
chr1 (92-187)||(37155072-37155167)
chr1 (77-198)||(46333948-46334069)
chr1 (87-212)||(47303396-47303521)
chr1 (71-155)||(1819485-1819569)
chr1 (101-186)||(17127590-17127675)
chr1 (102-187)||(29179624-29179709)
chr1 (102-187)||(48993944-48994029)
chr1 (113-187)||(1091582-1091656)
chr1 (113-187)||(32540786-32540860)
chr1 (73-190)||(5694888-5695004)
chr1 (102-183)||(5995399-5995480)
chr1 (102-195)||(33219591-33219684)
chr1 (102-198)||(49444940-49445034)
chr1 (88-186)||(48604960-48605058)
chr1 (77-186)||(48498442-48498550)
chr1 (95-198)||(38674525-38674626)
chr1 (124-211)||(15220813-15220900)
chr1 (151-214)||(34062285-34062348)
chr1 (124-187)||(36290456-36290519)
chr1 (104-187)||(45728313-45728396)
chr1 (125-187)||(44706834-44706896)
chr1 (138-187)||(21630068-21630117)
chr1 (157-214)||(48823884-48823941)
chr1 (151-215)||(46333944-46334008)
chr1 (77-216)||(28928781-28928912)
chr1 (142-187)||(28395663-28395708)
chr1 (151-198)||(4609072-4609119)
chr1 (151-198)||(47303471-47303518)
chr1 (151-213)||(28928779-28928841)
chr1 (158-196)||(37155129-37155167)
chr1 (149-187)||(46932023-46932061)
chr1 (151-216)||(1819486-1819551)
chr1 (151-212)||(8337853-8337913)
chr1 (157-198)||(19711195-19711236)
chr1 (165-198)||(36290430-36290463)
chr1 (151-215)||(741500-741564)
[»] chr4 (31 HSPs)
chr4 (74-198)||(55089995-55090119)
chr4 (72-198)||(40789194-40789320)
chr4 (72-198)||(47404582-47404708)
chr4 (102-198)||(42375025-42375121)
chr4 (92-198)||(52028564-52028670)
chr4 (102-187)||(51265471-51265556)
chr4 (102-187)||(23444296-23444381)
chr4 (102-187)||(47661868-47661953)
chr4 (102-186)||(47762635-47762719)
chr4 (77-198)||(31430463-31430581)
chr4 (102-187)||(6271728-6271813)
chr4 (87-162)||(45591422-45591497)
chr4 (102-190)||(53954633-53954721)
chr4 (124-187)||(30861823-30861886)
chr4 (102-187)||(31532716-31532801)
chr4 (102-187)||(35682192-35682277)
chr4 (77-162)||(50384107-50384192)
chr4 (102-185)||(26186043-26186124)
chr4 (151-215)||(50384103-50384167)
chr4 (151-216)||(47404582-47404647)
chr4 (151-198)||(52028625-52028672)
chr4 (74-160)||(28693922-28694008)
chr4 (157-215)||(31430459-31430517)
chr4 (77-162)||(24006072-24006157)
chr4 (151-216)||(40789255-40789320)
chr4 (74-135)||(55090074-55090135)
chr4 (77-133)||(55089879-55089935)
chr4 (151-214)||(24006069-24006132)
chr4 (103-162)||(25818401-25818460)
chr4 (157-214)||(55089876-55089933)
chr4 (151-187)||(6271778-6271814)
[»] chr3 (25 HSPs)
chr3 (74-211)||(47677254-47677391)
chr3 (77-187)||(43139711-43139821)
chr3 (102-195)||(1801473-1801566)
chr3 (102-187)||(51046100-51046185)
chr3 (92-211)||(29031731-29031850)
chr3 (69-187)||(55223258-55223376)
chr3 (102-187)||(50550001-50550086)
chr3 (74-186)||(30476473-30476585)
chr3 (77-181)||(33689208-33689312)
chr3 (102-187)||(41752990-41753075)
chr3 (138-198)||(39385751-39385811)
chr3 (92-187)||(18321677-18321772)
chr3 (102-181)||(47492074-47492153)
chr3 (146-198)||(1801566-1801618)
chr3 (103-187)||(30734430-30734514)
chr3 (153-214)||(49414501-49414562)
chr3 (112-185)||(50524730-50524803)
chr3 (102-186)||(30580783-30580867)
chr3 (151-214)||(33689252-33689315)
chr3 (74-131)||(47677337-47677394)
chr3 (77-190)||(49418693-49418806)
chr3 (151-214)||(43139708-43139771)
chr3 (149-211)||(1272495-1272557)
chr3 (151-187)||(30476500-30476536)
chr3 (151-187)||(47492073-47492109)
[»] chr2 (21 HSPs)
chr2 (94-215)||(2828582-2828703)
chr2 (87-187)||(15011306-15011406)
chr2 (102-198)||(6217251-6217347)
chr2 (102-214)||(14229380-14229491)
chr2 (87-198)||(2893978-2894089)
chr2 (123-201)||(29925618-29925696)
chr2 (113-207)||(38933593-38933687)
chr2 (102-197)||(37961722-37961817)
chr2 (93-187)||(37762019-37762113)
chr2 (102-183)||(14470619-14470700)
chr2 (102-187)||(16514450-16514535)
chr2 (113-187)||(6721977-6722051)
chr2 (125-187)||(29508741-29508803)
chr2 (101-183)||(24115950-24116032)
chr2 (74-135)||(14464554-14464615)
chr2 (87-187)||(9172993-9173093)
chr2 (102-177)||(14892297-14892371)
chr2 (151-198)||(15011356-15011403)
chr2 (157-190)||(2828666-2828699)
chr2 (164-192)||(1992266-1992294)
chr2 (146-198)||(2143943-2143995)
[»] chr8 (18 HSPs)
chr8 (77-187)||(8243390-8243500)
chr8 (102-187)||(35440996-35441081)
chr8 (102-207)||(39850961-39851066)
chr8 (101-216)||(6296602-6296717)
chr8 (102-187)||(5033187-5033272)
chr8 (101-185)||(4958627-4958710)
chr8 (102-186)||(10086784-10086868)
chr8 (102-187)||(45191154-45191239)
chr8 (102-186)||(8796449-8796533)
chr8 (77-175)||(34229679-34229777)
chr8 (102-187)||(33841618-33841703)
chr8 (77-196)||(34541805-34541924)
chr8 (102-187)||(5667123-5667208)
chr8 (143-185)||(2581853-2581895)
chr8 (113-162)||(31159902-31159951)
chr8 (151-187)||(10086833-10086869)
chr8 (151-215)||(34541801-34541865)
chr8 (102-150)||(35031641-35031689)
[»] chr7 (20 HSPs)
chr7 (87-198)||(29053326-29053437)
chr7 (77-187)||(27028795-27028905)
chr7 (72-198)||(4649335-4649463)
chr7 (102-187)||(11016895-11016980)
chr7 (102-187)||(15027568-15027653)
chr7 (125-189)||(7671961-7672025)
chr7 (102-183)||(38975835-38975916)
chr7 (87-187)||(34854707-34854807)
chr7 (128-187)||(22764753-22764812)
chr7 (92-187)||(41018245-41018340)
chr7 (113-198)||(42628310-42628395)
chr7 (102-181)||(48000769-48000848)
chr7 (138-187)||(45231913-45231962)
chr7 (151-217)||(41018224-41018290)
chr7 (102-187)||(4290571-4290656)
chr7 (125-185)||(30217504-30217564)
chr7 (138-191)||(10419480-10419533)
chr7 (146-187)||(27028754-27028795)
chr7 (151-187)||(11016945-11016981)
chr7 (102-150)||(48000721-48000769)
[»] chr6 (15 HSPs)
chr6 (73-198)||(10521847-10521972)
chr6 (102-211)||(24618628-24618737)
chr6 (92-187)||(551182-551277)
chr6 (102-198)||(12343115-12343211)
chr6 (138-214)||(31654304-31654380)
chr6 (123-187)||(17750928-17750992)
chr6 (123-186)||(24587488-24587551)
chr6 (96-214)||(2315325-2315443)
chr6 (151-197)||(551181-551227)
chr6 (157-211)||(10521851-10521905)
chr6 (77-135)||(31654307-31654365)
chr6 (124-181)||(13043489-13043546)
chr6 (74-135)||(24618679-24618740)
chr6 (87-135)||(10521927-10521975)
chr6 (151-187)||(12343176-12343212)
[»] scaffold0016 (1 HSPs)
scaffold0016 (103-198)||(49731-49826)
[»] scaffold0586 (1 HSPs)
scaffold0586 (113-187)||(7085-7159)
[»] scaffold1033 (1 HSPs)
scaffold1033 (76-161)||(2265-2350)
[»] scaffold1029 (1 HSPs)
scaffold1029 (76-161)||(2265-2350)
[»] scaffold0481 (2 HSPs)
scaffold0481 (87-163)||(2899-2975)
scaffold0481 (151-198)||(2902-2949)
[»] scaffold0161 (1 HSPs)
scaffold0161 (113-187)||(27258-27332)
[»] scaffold0180 (1 HSPs)
scaffold0180 (107-160)||(19154-19207)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 16802649 - 16802436
Alignment:
Q  8 cttacttttgaataaatttaatctagaagtttatcatggtttaattacaaaggaaggtggtatgacggatagcacttaagtgatatagagttgagtgaca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16802649 cttacttttgaataaatttaatctagaagtttatcatggtttaattacaaaggaaggtggtatgacggatagcacttaagtgatatagagttgagtgaca 16802550  T
Q  108 ttgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagt 207  Q
    |||| |||||| || ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  16802549 ttgaccaatcagaatgtcacaatgcttgtaaaagagagagaaacacaaatattgttacattgtgattggccaatgtcacccaaatttatgttacctaagt 16802450  T
Q  208 gctacccgtggtat 221  Q
    ||||||||||||||    
T  16802449 gctacccgtggtat 16802436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 16439264 - 16439164
Alignment:
Q  87 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 186  Q
    |||| ||||||||| ||||||||||||||||| || |||||||||||||  |||||||||||||||||| |||||| |||||||||||| ||||||||||    
T  16439264 gtgacatagagttgggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtcac 16439165  T
Q  187 c 187  Q
    |    
T  16439164 c 16439164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 3180062 - 3180172
Alignment:
Q  77 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 176  Q
    ||||||||  |||| ||||||||| |||||||||||||||||||| ||||||||| |||  |||||||||||||||||| ||||||  |||||||||||     
T  3180062 tagcacttgtgtgacatagagttgggtgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattga 3180161  T
Q  177 ccaatgtcacc 187  Q
    |||||||||||    
T  3180162 ccaatgtcacc 3180172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 3899950 - 3899854
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    |||||||||| |||||| || |||||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||||| |||||||    
T  3899950 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacccaactctatgt 3899854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 16971255 - 16971159
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    |||||||||| |||||| || |||||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||||| |||||||    
T  16971255 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacccaagtctatgt 16971159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 214
Target Start/End: Complemental strand, 28819028 - 28818916
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgttac 201  Q
    ||||||||| |||||||||| |||||||||||||  ||||||||||||| ||||  ||||| |||||||||||| |||||||||||||| ||||||| ||    
T  28819028 gtgacattggtcaatcataatgtcacaatgcttgtgaaagagagagaaatacaagtattgtgacattgtgattgaccaatgtcacccaactctatgtcac 28818929  T
Q  202 ttaagtgctaccc 214  Q
      |||||||||||    
T  28818928 ccaagtgctaccc 28818916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 19655269 - 19655184
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||  |||||| || |||||||||||||  |||||||||||||||||||||||||  |||||||||||||||||||||||    
T  19655269 gtgacattgtccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacc 19655184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 29699478 - 29699393
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||  |||||| || |||||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  29699478 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 29699393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 291208 - 291123
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||||||||||||||| || ||||||||| |||  ||||||| ||||| |||| ||||||  |||||||||||||||||||||||    
T  291208 gtgacattgatcaatcacaatgtcacaatgtttgtgaaagagaaagaaatacaagcattgtggcattgtgattggccaatgtcacc 291123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 214
Target Start/End: Complemental strand, 26662511 - 26662398
Alignment:
Q  102 gtgacattgatcaa-tcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgtta 200  Q
    ||||||||| |||| ||| || |||||||| ||||  ||| |||||||||||||| || ||| ||||||||||||| ||||||||||||| ||||||| |    
T  26662511 gtgacattggtcaaatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtcaatgtcacccaactctatgtca 26662412  T
Q  201 cttaagtgctaccc 214  Q
    |  |||||||||||    
T  26662411 cacaagtgctaccc 26662398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 214
Target Start/End: Complemental strand, 26934106 - 26933993
Alignment:
Q  102 gtgacattgatcaa-tcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgtta 200  Q
    ||||||||| |||| ||| || |||||||| ||||  ||| |||||||||||||| || ||| ||||||||||||| ||||||||||||| ||||||| |    
T  26934106 gtgacattggtcaaatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtcaatgtcacccaactctatgtca 26934007  T
Q  201 cttaagtgctaccc 214  Q
    |  |||||||||||    
T  26934006 cacaagtgctaccc 26933993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 19598457 - 19598358
Alignment:
Q  87 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 186  Q
    |||| ||||||||| |||||||| | ||||||||| |||| ||||||||  |||||||||||||||||| ||||||   |||||||||| ||||||||||    
T  19598457 gtgacatagagttgggtgacattaaccaatcataatgtca-aatgcttgtgaaagagagagaaacacaagcattgtggtattgtgattgaccaatgtcac 19598359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 12913914 - 12913829
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||| |||| ||||||| || |||| ||||||||  ||||||||||| ||||||  ||||| ||||||||||||||||||||||||    
T  12913914 gtgatattggtcaatcacaatgtcataatgcttgtgaaagagagagatacacaagaattgtgacattgtgattggccaatgtcacc 12913829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 38134411 - 38134496
Alignment:
Q  113 caatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    |||||| || ||||||||||| |  ||||||| |||||||||| |||||| |||||||||||||||||| ||| |||| |||||||    
T  38134411 caatcacaatgtcacaatgctagtgaaagagaaagaaacacaagcattgtgacattgtgattggccaatatcatccaactctatgt 38134496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 2093964 - 2094060
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    ||||||||||||||||| || |||| ||||||||  |||||||||||||||||| |||| | | | ||||||| | |||| |||||||| |||||||    
T  2093964 gtgacattgatcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattatgatagtgtgattagtcaatatcacccaattctatgt 2094060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 2935825 - 2935926
Alignment:
Q  73 cggatagcacttaagtgatatagagttgagtgacattgatc---aatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattg 169  Q
    ||||||||| ||| |||||||||||||| |||||||| ||    ||||| || |||| |||| ||| |||||| ||||||||||||||||||| ||||||    
T  2935825 cggatagcatttaggtgatatagagttgtgtgacattaattgttaatcacaatgtcataatgtttgtaaaagatagagaaacacaaacattgtgacattg 2935924  T
Q  170 tg 171  Q
    ||    
T  2935925 tg 2935926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 2953301 - 2953241
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgt 162  Q
    |||||||||  |||||| || |||||||||||||  |||||||||||||||||| ||||||    
T  2953301 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgt 2953241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 3180122 - 3180059
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctaccc 214  Q
    |||||||||||| ||||| ||||||  ||||||||||||| ||||||| ||  |||||||||||    
T  3180122 cacaaacattgtgacattatgattgatcaatgtcacccaactctatgtcacacaagtgctaccc 3180059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 1638521 - 1638484
Alignment:
Q  149 aacacaaacattgttacattgtgattggccaatgtcac 186  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  1638521 aacacaaacattgtgacattgtgattggccaatatcac 1638484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 2953266 - 2953302
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  2953266 cacaagcattgtgacattgtgattggccaatgtcacc 2953302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 16802521 - 16802585
Alignment:
Q  152 acaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctacccgt 216  Q
    |||| |||||| ||||| ||||||| ||||||||| ||| ||||| | |||||||||||| ||||    
T  16802521 acaagcattgtgacattctgattggtcaatgtcactcaactctatatcacttaagtgctatccgt 16802585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 29699443 - 29699479
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  29699443 cacaagcattgtgacattgtgattggccaatgtcacc 29699479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 63883 - 63772
Alignment:
Q  87 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 186  Q
    |||||||||||||| |||||||||  |||||| || |||||||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||    
T  63883 gtgatatagagttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcac 63784  T
Q  187 ccaaatctatgt 198  Q
    |||| |||||||    
T  63783 ccaactctatgt 63772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 63833 - 63878
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctat 196  Q
    ||||| |||||| ||||||||||||||||||||||||||| |||||    
T  63833 cacaagcattgtgacattgtgattggccaatgtcacccaactctat 63878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 198
Target Start/End: Original strand, 8337854 - 8337974
Alignment:
Q  77 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 176  Q
    ||||||||| |||||||||||||| ||||||||| ||||||| || ||||||||| |||  |||||||||||||||||||||||||  ||||||||||||    
T  8337854 tagcacttaggtgatatagagttg-gtgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattgtggcattgtgattgg 8337952  T
Q  177 ccaatgtcacccaaatctatgt 198  Q
     ||||||||||||| |||||||    
T  8337953 tcaatgtcacccaactctatgt 8337974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 4609137 - 4609022
Alignment:
Q  72 acggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtg 171  Q
    |||||||| ||||  |||| ||||||||| ||||||||| ||||||| || |||||||||||||  ||||||||||||||||||||||||| ||||||||    
T  4609137 acggatagtacttgtgtgacatagagttgggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtg 4609038  T
Q  172 attggccaatgtcacc 187  Q
    || || ||||||||||    
T  4609037 atgggtcaatgtcacc 4609022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 29371479 - 29371383
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    |||| ||||| |||||| || |||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||    
T  29371479 gtgatattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgtcacctaactctatgt 29371383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 34062330 - 34062224
Alignment:
Q  92 atagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaa 191  Q
    ||||||||| |||||||||| |||||| || ||||||||| |||  ||||||||||||||| || ||||||  ||||||||||||||||||||||||||     
T  34062330 atagagttgggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacataagcattgtggcattgtgattggccaatgtcacccaac 34062231  T
Q  192 tctatgt 198  Q
    |||||||    
T  34062230 tctatgt 34062224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 183
Target Start/End: Complemental strand, 9157449 - 9157340
Alignment:
Q  74 ggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgat 173  Q
    |||||||||||  |||| |||||||||  |||||||||||||||| ||  ||||||||||||  |||||||||||||||||| |||||| ||||||||||    
T  9157449 ggatagcacttgtgtgacatagagttggttgacattgatcaatcacaatatcacaatgcttgagaaagagagagaaacacaagcattgtgacattgtgat 9157350  T
Q  174 tggccaatgt 183  Q
    ||| ||||||    
T  9157349 tggtcaatgt 9157340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 77 - 192
Target Start/End: Original strand, 741504 - 741619
Alignment:
Q  77 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 176  Q
    ||||||||  |||||||||| ||  |||||||||  |||||| || |||||||||||||  |||||||||||||||||| |||||| |||||||||| |     
T  741504 tagcacttgcgtgatatagaattaggtgacattgcccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgatcga 741603  T
Q  177 ccaatgtcacccaaat 192  Q
    ||||||||||||||||    
T  741604 ccaatgtcacccaaat 741619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 37155167 - 37155072
Alignment:
Q  92 atagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||||||| |||||||||  |||||| || |||||||| ||||  |||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  37155167 atagagttgggtgacattggccaatcacaatgtcacaatacttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 37155072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 198
Target Start/End: Original strand, 46333948 - 46334069
Alignment:
Q  77 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 176  Q
    ||||||||  |||| |||||||||  ||||||||  |||||| || |||||||||||||  ||||||||| |||||||| |||||| |||||||||||||    
T  46333948 tagcacttgggtgacatagagttggatgacattggccaatcacaatgtcacaatgcttgtgaaagagagaaaaacacaagcattgtgacattgtgattgg 46334047  T
Q  177 ccaatgtcacccaaatctatgt 198  Q
     |||||||| |||| |||||||    
T  46334048 tcaatgtcatccaactctatgt 46334069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 212
Target Start/End: Complemental strand, 47303521 - 47303396
Alignment:
Q  87 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 186  Q
    |||| ||||||||  ||||||||| ||||||| || ||||||||| |||  ||||||||||||||||||||||| | ||||||||||||| |||| ||||    
T  47303521 gtgacatagagttaggtgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattggtcaatatcac 47303422  T
Q  187 ccaaatctatgttacttaagtgctac 212  Q
    | || ||||| | ||| |||||||||    
T  47303421 ctaactctatatcactcaagtgctac 47303396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 1819485 - 1819569
Alignment:
Q  71 gacggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaa 155  Q
    |||||||||||||| | ||| ||||||||| ||||||||||||||||| || |||||||||||||  ||||||||||||||||||    
T  1819485 gacggatagcacttgaatgacatagagttgggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaa 1819569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 17127590 - 17127675
Alignment:
Q  101 agtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 186  Q
    ||||||||||| |||||| || |||||||||||||  |||||||||||||||||| |||||| ||||| ||||||| |||||||||    
T  17127590 agtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattttgattggtcaatgtcac 17127675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 29179624 - 29179709
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||| ||| |||||| || |||||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  29179624 gtgacactgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 29179709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 48993944 - 48994029
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||| |||||| || |||||||||||||  |||||||||||||||||| ||||||  |||||||||||| ||||||||||    
T  48993944 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcacc 48994029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 1091582 - 1091656
Alignment:
Q  113 caatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||| || |||||||||||||  ||||||||||||||||||||||||| ||||||||||||| ||| ||||||    
T  1091582 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggtcaaagtcacc 1091656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 32540786 - 32540860
Alignment:
Q  113 caatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||| || |||||||||||||  |||||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  32540786 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtaacattgtgattggtcaatgtcacc 32540860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 5694888 - 5695004
Alignment:
Q  73 cggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtga 172  Q
    |||||| ||||| ||||| ||||||||  ||||||||| ||||||| ||  | | ||||||||  ||||||||||||||||||| ||||| ||||||| |    
T  5694888 cggataacacttgagtgacatagagtttggtgacattggtcaatcacaatatta-aatgcttgtgaaagagagagaaacacaaatattgtgacattgtaa 5694986  T
Q  173 ttggccaatgtcacccaa 190  Q
    ||| ||||||||||||||    
T  5694987 ttgaccaatgtcacccaa 5695004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 5995480 - 5995399
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgt 183  Q
    |||||||||| |||||| || | |||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||    
T  5995480 gtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgt 5995399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 33219684 - 33219591
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatcta 195  Q
    ||||||||||||||||| || |||| ||||||||  ||||||||| |||||||| |||||| ||||||||||||  |||||||| |||| ||||    
T  33219684 gtgacattgatcaatcacaatgtcataatgcttgtgaaagagagaaaaacacaagcattgtaacattgtgattgatcaatgtcatccaattcta 33219591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 49444940 - 49445034
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    ||||||| ||||||||| || || ||||||||||  |  ||||||||||||||| ||||||  |||||||||||||||||||||||||| |||||||    
T  49444940 gtgacatcgatcaatcacaatgttacaatgcttgtga--gagagagaaacacaagcattgtggcattgtgattggccaatgtcacccaactctatgt 49445034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 186
Target Start/End: Original strand, 48604960 - 48605058
Alignment:
Q  88 tgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 186  Q
    ||||||||||||  ||||||||| ||||||| || ||||||||  |||  |||||||||||||| ||| |||||| ||||| | |||||||||||||||    
T  48604960 tgatatagagttaggtgacattggtcaatcacaatgtcacaatatttgtgaaagagagagaaacgcaagcattgtgacattataattggccaatgtcac 48605058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 48498550 - 48498442
Alignment:
Q  77 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 176  Q
    ||||||||  |||| ||||||||| |||||||||| |||||| || || || |||||||  |||||||||||||||||||||||||   ||| ||||||     
T  48498550 tagcacttgggtgacatagagttg-gtgacattgaccaatcacaatgttaccatgcttgtgaaagagagagaaacacaaacattgtggtattatgattga 48498452  T
Q  177 ccaatgtcac 186  Q
    ||||||||||    
T  48498451 ccaatgtcac 48498442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 198
Target Start/End: Original strand, 38674525 - 38674626
Alignment:
Q  95 gagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatct 194  Q
    |||||| |||| ||||  |||||| || |||||||||||||  ||||||  |||||||||| |||||| ||||| |||||||||||| |||||||| |||    
T  38674525 gagttgggtgatattggccaatcacaatgtcacaatgcttgtgaaagag--agaaacacaagcattgtgacattatgattggccaatatcacccaactct 38674622  T
Q  195 atgt 198  Q
    ||||    
T  38674623 atgt 38674626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 15220900 - 15220813
Alignment:
Q  124 tcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgcta 211  Q
    ||||||||||||  |||||||||||||||||| |||||| | || ||||||| |||||||||||||| || |||| ||  ||||||||    
T  15220900 tcacaatgcttgtgaaagagagagaaacacaagcattgtgagatcgtgattgaccaatgtcacccaactccatgtcacccaagtgcta 15220813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 34062285 - 34062348
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctaccc 214  Q
    |||||||||||| ||||||||||||| ||||||||||||| ||||||||||  || ||||||||    
T  34062285 cacaaacattgtgacattgtgattggtcaatgtcacccaactctatgttacccaaatgctaccc 34062348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 36290456 - 36290519
Alignment:
Q  124 tcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||||||||||  ||||||||||||||||||| ||||| ||||||||||||| ||||| ||||    
T  36290456 tcacaatgcttgtgaaagagagagaaacacaaatattgtgacattgtgattggtcaatgccacc 36290519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 45728396 - 45728313
Alignment:
Q  104 gacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||||| ||||||| || |||| ||||||||  |||||||||||||||||| |||||| | ||||||||||| |||| |||||    
T  45728396 gacattggtcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatatcacc 45728313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 44706834 - 44706896
Alignment:
Q  125 cacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||||  |||||||||||||||||| |||||   |||||||||||||||||||||||    
T  44706834 cacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcacc 44706896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 21630117 - 21630068
Alignment:
Q  138 aaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  21630117 aaagagagagaaacacaagcattgtgacattgtgattggtcaatgtcacc 21630068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 48823941 - 48823884
Alignment:
Q  157 cattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctaccc 214  Q
    |||||| ||||||||||||||||||||||||||| ||||||| ||  |||||||||||    
T  48823941 cattgtgacattgtgattggccaatgtcacccaactctatgtcacccaagtgctaccc 48823884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 46334008 - 46333944
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctacccg 215  Q
    ||||| |||||| |||||||||||||||||||||| |||| ||||||| ||  ||||||||||||    
T  46334008 cacaagcattgtgacattgtgattggccaatgtcatccaactctatgtcacccaagtgctacccg 46333944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 28928781 - 28928912
Alignment:
Q  77 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 176  Q
    ||||||||  |||| ||||||||  |||||||||  |||||| || |||||| ||||||  ||||||||||||||||||        ||| |||||||||    
T  28928781 tagcacttgggtgacatagagtttggtgacattggccaatcacaatgtcacagtgcttgtgaaagagagagaaacacaa--------acactgtgattgg 28928872  T
Q  177 ccaatgtcacccaaatctatgttacttaagtgctacccgt 216  Q
    ||||||||||| || ||||| | ||| |||||||| ||||    
T  28928873 ccaatgtcaccaaactctatatcactcaagtgctatccgt 28928912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 28395708 - 28395663
Alignment:
Q  142 agagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||||    
T  28395708 agagagaaacacaagcattgtgacattgtgattggtcaatgtcacc 28395663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 4609072 - 4609119
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    ||||| |||||| |||||||||||| |||||||||||||| |||||||    
T  4609072 cacaagcattgtgacattgtgattgaccaatgtcacccaactctatgt 4609119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 47303471 - 47303518
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    |||||||||||| |||||||||||| ||||||||||| || |||||||    
T  47303471 cacaaacattgtgacattgtgattgaccaatgtcacctaactctatgt 47303518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 28928841 - 28928779
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctacc 213  Q
    ||||| || ||| |||||||||||||||||||||||| || ||||||| ||  ||||||||||    
T  28928841 cacaagcactgtgacattgtgattggccaatgtcaccaaactctatgtcacccaagtgctacc 28928779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 37155129 - 37155167
Alignment:
Q  158 attgttacattgtgattggccaatgtcacccaaatctat 196  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  37155129 attgtgacattgtgattggccaatgtcacccaactctat 37155167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 46932061 - 46932023
Alignment:
Q  149 aacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  46932061 aacacaaacattgtggcattgtgattggccaatgtcacc 46932023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 1819551 - 1819486
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctacccgt 216  Q
    ||||| |||||| ||||||||||||  ||||||||||||| ||||||| | | |||||||| ||||    
T  1819551 cacaagcattgtgacattgtgattgatcaatgtcacccaactctatgtcattcaagtgctatccgt 1819486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 8337913 - 8337853
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctac 212  Q
    |||||||||||| |||||||||||| ||||||||| |||| ||||| | || ||||||||||    
T  8337913 cacaaacattgtgacattgtgattgaccaatgtca-ccaactctatatcacctaagtgctac 8337853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 19711236 - 19711195
Alignment:
Q  157 cattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    |||||| ||||||||||||| ||||||||||||| |||||||    
T  19711236 cattgtaacattgtgattggtcaatgtcacccaactctatgt 19711195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 36290463 - 36290430
Alignment:
Q  165 cattgtgattggccaatgtcacccaaatctatgt 198  Q
    |||||||||||||||||||||||||| |||||||    
T  36290463 cattgtgattggccaatgtcacccaactctatgt 36290430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 741564 - 741500
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctacccg 215  Q
    ||||| |||||| ||||||||||||| |||||||||| || ||||| | ||  ||||||||||||    
T  741564 cacaagcattgtgacattgtgattgggcaatgtcacctaattctatatcacgcaagtgctacccg 741500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 198
Target Start/End: Original strand, 55089995 - 55090119
Alignment:
Q  74 ggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgat 173  Q
    ||||| |||||  |||| ||||||||||||||||||| ||||||| || |||||||||||||  ||||||||||| |||||| |||||| ||||||||||    
T  55089995 ggatatcacttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagagacacaagcattgtgacattgtgat 55090094  T
Q  174 tggccaatgtcacccaaatctatgt 198  Q
    || |||||||||| ||| |||||||    
T  55090095 tgaccaatgtcactcaactctatgt 55090119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 40789320 - 40789194
Alignment:
Q  72 acggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtg 171  Q
    |||| ||||||||  |||| ||||||||  |||| ||||  |||||| || |||||||||||||  ||||||||||||||||||||||||| ||||||||    
T  40789320 acgggtagcacttgggtgacatagagtttggtgatattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtg 40789221  T
Q  172 attggccaatgtcacccaaatctatgt 198  Q
    |||||||||||||||| || |||||||    
T  40789220 attggccaatgtcaccaaactctatgt 40789194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 47404582 - 47404708
Alignment:
Q  72 acggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtg 171  Q
    |||| ||||||||  |||| ||||||||| ||||||||| ||||||| || |||||||||||||  |||||||||||||| ||| ||||||  |||||||    
T  47404582 acgggtagcacttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacccaagcattgtggcattgtg 47404681  T
Q  172 attggccaatgtcacccaaatctatgt 198  Q
    |||| |||||||||||||| |||||||    
T  47404682 attgaccaatgtcacccaactctatgt 47404708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 42375121 - 42375025
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    ||||||||||||||||| || |||||||||||||  |||||||||||||||||| ||||||  ||||||||||| |||||||||||||| |||||||    
T  42375121 gtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgtcacccaactctatgt 42375025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 52028670 - 52028564
Alignment:
Q  92 atagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaa 191  Q
    ||||| ||| |||||||||  |||||| || |||||||||||||  ||||||||||||||||||||||||| |||| ||||||||||||| ||||||||     
T  52028670 atagaattgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacatcgtgattggccaatatcacccaac 52028571  T
Q  192 tctatgt 198  Q
    |||||||    
T  52028570 tctatgt 52028564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 51265556 - 51265471
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||| ||||||||| |||||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  51265556 gtgacattgaccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 51265471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 23444296 - 23444381
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||| |||||| || |||||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  23444296 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 23444381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 47661953 - 47661868
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||| |||||| || |||||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  47661953 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 47661868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 47762719 - 47762635
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 186  Q
    ||||||||| |||| ||||| |||||||||||||  ||||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  47762719 gtgacattggtcaaccataatgtcacaatgcttgtgaaagagagagaaacataaacattgtaacattgtgattggtcaatgtcac 47762635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 198
Target Start/End: Original strand, 31430463 - 31430581
Alignment:
Q  77 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 176  Q
    ||||||||  |||| ||||||||| |||||||||| |||||| || ||||||||||||   ||||||||||||||||||||   ||  |||||| |||||    
T  31430463 tagcacttgggtgacatagagttgggtgacattgaccaatcacaatgtcacaatgcttatgaaagagagagaaacacaaac---gtggcattgtaattgg 31430559  T
Q  177 ccaatgtcacccaaatctatgt 198  Q
    |||||||||||||| |||||||    
T  31430560 ccaatgtcacccaactctatgt 31430581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 6271813 - 6271728
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||  |||||| || |||||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  6271813 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 6271728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 45591422 - 45591497
Alignment:
Q  87 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgt 162  Q
    |||||||||||||| ||| ||||  |||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  45591422 gtgatatagagttgggtggcattcgtcaatcataatgtcacaatgcttgtgaaagagagagaaacacaaacattgt 45591497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 53954721 - 53954633
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 190  Q
    |||||||||  |||| | || |||||||||||||  |||||| ||||||||| | |||||| |||||||||||||||||||||||||||    
T  53954721 gtgacattgtccaattacaatgtcacaatgcttgtgaaagagtgagaaacactagcattgtgacattgtgattggccaatgtcacccaa 53954633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 30861823 - 30861886
Alignment:
Q  124 tcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  30861823 tcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 30861886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 31532716 - 31532801
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||||||| ||||||| || ||||||||   || |||||||||||||| ||||||||||| || |||||||||| ||||||||||    
T  31532716 gtgacattgttcaatcacaatgtcacaatatatgtaaaagagagagaaatacaaacattgtgacgttgtgattggtcaatgtcacc 31532801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 35682277 - 35682192
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||| | |||| || |||||||||||||  ||||| ||||||||||||  ||| | ||||||||||||||||||||||||    
T  35682277 gtgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcacc 35682192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 50384107 - 50384192
Alignment:
Q  77 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgt 162  Q
    ||||||||  |||| ||||||||| |||||||||  |||||| || |||||||||||||  |||||||||||||||||| ||||||    
T  50384107 tagcacttgggtgacatagagttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgt 50384192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 26186043 - 26186124
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtca 185  Q
    ||||||||| ||||||| || |||||||||||||  ||||||  |||||||||| |||||| | ||||||||||||||||||||    
T  26186043 gtgacattggtcaatcacaatgtcacaatgcttgtgaaagag--agaaacacaagcattgtgaaattgtgattggccaatgtca 26186124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 50384167 - 50384103
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctacccg 215  Q
    ||||| |||||| ||||||||||||||||||||||||||| ||||||| ||  ||||||||||||    
T  50384167 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacccaagtgctacccg 50384103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 47404647 - 47404582
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctacccgt 216  Q
    ||||| |||||| |||||||||||| |||||||||||||| ||||||| ||  |||||||||||||    
T  47404647 cacaagcattgtgacattgtgattgaccaatgtcacccaactctatgtcacccaagtgctacccgt 47404582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 52028625 - 52028672
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    ||||| |||||| ||||||||||||||||||||||||||| |||||||    
T  52028625 cacaagcattgtgacattgtgattggccaatgtcacccaattctatgt 52028672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 28693922 - 28694008
Alignment:
Q  74 ggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacatt 160  Q
    |||||||||||  |||| ||| |||||  ||||||||| |||||| ||  |||||||| |||  |||||||||||||||||||||||    
T  28693922 ggatagcacttgggtgacataaagttggatgacattgaccaatcacaatatcacaatgtttgtgaaagagagagaaacacaaacatt 28694008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 31430517 - 31430459
Alignment:
Q  157 cattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctacccg 215  Q
    |||||| ||||||||||||| ||||||||||||| ||||||| ||  ||||||||||||    
T  31430517 cattgtgacattgtgattggtcaatgtcacccaactctatgtcacccaagtgctacccg 31430459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 24006072 - 24006157
Alignment:
Q  77 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgt 162  Q
    ||||||||  |||| ||| ||||| |||||||||  |||||| || | |||||||||||  ||||||||||||||| |||||||||    
T  24006072 tagcacttgggtgacatacagttgggtgacattggccaatcacaatgacacaatgcttgtgaaagagagagaaacataaacattgt 24006157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 40789255 - 40789320
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctacccgt 216  Q
    ||||| |||||| |||||||||||||||||| ||||| || ||||||| ||  |||||||||||||    
T  40789255 cacaagcattgtgacattgtgattggccaatatcaccaaactctatgtcacccaagtgctacccgt 40789320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 55090135 - 55090074
Alignment:
Q  74 ggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttg 135  Q
    ||||| |||||  |||| ||||||||||||||||||| ||||||| || |||||||||||||    
T  55090135 ggatatcacttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgcttg 55090074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 55089879 - 55089935
Alignment:
Q  77 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgct 133  Q
    ||||| ||| |||| ||||||||||||||||||| ||||||| || |||||||||||    
T  55089879 tagcatttaggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgct 55089935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 24006132 - 24006069
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctaccc 214  Q
    ||||| ||||||  |||||||||||||||||||||||||| | ||||| ||  |||||||||||    
T  24006132 cacaagcattgtgtcattgtgattggccaatgtcacccaactgtatgtcacccaagtgctaccc 24006069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 25818401 - 25818460
Alignment:
Q  103 tgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgt 162  Q
    |||||||| ||||||| || ||||||||| |||  |||||||||||||||||| ||||||    
T  25818401 tgacattggtcaatcacaatgtcacaatgattgtgaaagagagagaaacacaatcattgt 25818460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 55089933 - 55089876
Alignment:
Q  157 cattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctaccc 214  Q
    |||||| |||||||||||| |||||||||| ||| ||||||| || ||| ||||||||    
T  55089933 cattgtgacattgtgattgaccaatgtcactcaactctatgtcacctaaatgctaccc 55089876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 6271778 - 6271814
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  6271778 cacaagcattgtgacattgtgattggccaatgtcacc 6271814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 47677254 - 47677391
Alignment:
Q  74 ggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgat 173  Q
    ||||| |||||  |||| ||||||||  |||||||||| | |||| || |||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  47677254 ggataacacttgtgtgacatagagtttggtgacattgaccgatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgat 47677353  T
Q  174 tggccaatgtcacccaaatctatgttacttaagtgcta 211  Q
    ||  ||||||||||||| ||||||| ||  ||||||||    
T  47677354 tgatcaatgtcacccaactctatgtcacacaagtgcta 47677391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 43139711 - 43139821
Alignment:
Q  77 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 176  Q
    |||||||| ||||| ||||||||| ||||||| | ||||||| || |||| ||||||||  |||||||||||||||||| ||||||  |||||| |||||    
T  43139711 tagcacttgagtgacatagagttgggtgacatcggtcaatcacaatgtcagaatgcttgtgaaagagagagaaacacaagcattgtggcattgttattgg 43139810  T
Q  177 ccaatgtcacc 187  Q
    |||||||||||    
T  43139811 ccaatgtcacc 43139821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 1801473 - 1801566
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatcta 195  Q
    |||||||||  |||||| || | |||||||||||  |||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||    
T  1801473 gtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactcta 1801566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 51046100 - 51046185
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||||||||||||| ||||||||| |||  |||||||||||||||||| |||| |  |||||||||||||||||||||||    
T  51046100 gtgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattatggcattgtgattggccaatgtcacc 51046185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 29031731 - 29031850
Alignment:
Q  92 atagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaa 191  Q
    ||||||||  |||| |||| ||||||| || |||||||||||||  ||||||||||||||||||||||||| ||||||| |||| ||||| ||||| ||     
T  29031731 atagagttaggtgatattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtaattgaccaatatcacctaac 29031830  T
Q  192 tctatgttacttaagtgcta 211  Q
    ||||||| ||  ||||||||    
T  29031831 tctatgtcacacaagtgcta 29031850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 187
Target Start/End: Complemental strand, 55223376 - 55223258
Alignment:
Q  69 atgacggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacatt 168  Q
    ||||||||||||||||  |||| |||||||| ||||| |||| |||||||||| |||||||||||||  ||||||||||||||| ||  ||| | | |||    
T  55223376 atgacggatagcacttgggtgacatagagttaagtgatattggtcaatcataatgtcacaatgcttgtgaaagagagagaaacataagtattctaatatt 55223277  T
Q  169 gtgattggccaatgtcacc 187  Q
    ||||||| ||||| |||||    
T  55223276 gtgattgaccaatatcacc 55223258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 50550086 - 50550001
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||||||||||||| |||| |||| |||  |||||||||||||||||| |||||| | ||||||||||| ||||||||||    
T  50550086 gtgacattgatcaatcataatgtcataatgtttgtgaaagagagagaaacacaagcattgtaatattgtgattggtcaatgtcacc 50550001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 30476473 - 30476585
Alignment:
Q  74 ggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgat 173  Q
    |||||||||||  |||| | |||| |  |||||||||  |||||| || |||||||||||||  |||||||||||||||||| |||||| ||||||||||    
T  30476473 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgat 30476572  T
Q  174 tggccaatgtcac 186  Q
    || ||||||||||    
T  30476573 tgaccaatgtcac 30476585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 33689312 - 33689208
Alignment:
Q  77 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 176  Q
    ||||||||  |||| || |||||| |||||||||  |||||| || |||||||||||||  |||||||||||||||||| |||||| ||||||||||||     
T  33689312 tagcacttgggtgacattgagttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattga 33689213  T
Q  177 ccaat 181  Q
    |||||    
T  33689212 ccaat 33689208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 41753075 - 41752990
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||  |||||| || | |||||||||||  ||||||| |||||||||||||||||  |||||||||||||||||||||||    
T  41753075 gtgacattggccaatcacaatgccacaatgcttgtgaaagagaaagaaacacaaacattgtggcattgtgattggccaatgtcacc 41752990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 39385751 - 39385811
Alignment:
Q  138 aaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| |||||||    
T  39385751 aaagagagagaaatacaaatattgtaacattgtgattggccaatgtcacccaactctatgt 39385811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 18321772 - 18321677
Alignment:
Q  92 atagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||  |||||||| ||||||| || |||||||||| ||  ||| ||||| |||||||||| |||| |||||||||||| |||||||||||    
T  18321772 atagagttggatgacattggtcaatcacaatgtcacaatgcatgtgaaaaagagaaaaacacaaactttgtgacattgtgattgaccaatgtcacc 18321677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 47492074 - 47492153
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaat 181  Q
    |||||||||  |||||| || |||||||||||||  ||| |||||||||||||| |||||| ||||||||||||||||||    
T  47492074 gtgacattggccaatcacaatgtcacaatgcttgtgaaaaagagagaaacacaagcattgtgacattgtgattggccaat 47492153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 1801566 - 1801618
Alignment:
Q  146 agaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    |||||||||||||||||  |||||||||||||||||||||||||| |||||||    
T  1801566 agaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgt 1801618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 30734430 - 30734514
Alignment:
Q  103 tgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||||||| | |||| || |||||||||||||  ||||| ||||||||||||  ||| | ||||||||||||||||||||||||    
T  30734430 tgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcacc 30734514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 49414501 - 49414562
Alignment:
Q  153 caaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctaccc 214  Q
    |||||||||| ||||||| ||||||||||||||||||| ||||||| ||  |||||||||||    
T  49414501 caaacattgtgacattgtaattggccaatgtcacccaactctatgtcacccaagtgctaccc 49414562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 50524803 - 50524730
Alignment:
Q  112 tcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtca 185  Q
    ||||||| || || || |||||||  ||||||||||||||||||||||||| ||||| ||||||| ||||||||    
T  50524803 tcaatcacaatgttacgatgcttgtgaaagagagagaaacacaaacattgtgacattatgattggtcaatgtca 50524730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 30580783 - 30580867
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 186  Q
    |||| ||||| ||||||||| ||||||||  |||  ||||||| |||||||||| || ||| |||||||||||| ||||||||||    
T  30580783 gtgatattgaccaatcataatgtcacaatatttgtgaaagagatagaaacacaagcactgtgacattgtgattgaccaatgtcac 30580867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 33689252 - 33689315
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctaccc 214  Q
    ||||| |||||| ||||||||||||||||||||||||||| || |||| ||  |||||||||||    
T  33689252 cacaagcattgtgacattgtgattggccaatgtcacccaactcaatgtcacccaagtgctaccc 33689315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 47677394 - 47677337
Alignment:
Q  74 ggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatg 131  Q
    |||||||||||  |||| ||||||||| ||||||||||||||||| || |||||||||    
T  47677394 ggatagcacttgtgtgacatagagttgggtgacattgatcaatcacaatgtcacaatg 47677337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 190
Target Start/End: Original strand, 49418693 - 49418806
Alignment:
Q  77 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 176  Q
    ||||||||  |||| ||||||||| |||| |||| ||||||| || |||| |||  |||  |||||||||||||||||| |||| | | ||| | ||||     
T  49418693 tagcacttgggtgacatagagttgggtgatattggtcaatcacaatgtcataatatttgtgaaagagagagaaacacaagcattatgatattataattga 49418792  T
Q  177 ccaatgtcacccaa 190  Q
    ||||||||||||||    
T  49418793 ccaatgtcacccaa 49418806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 43139771 - 43139708
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctaccc 214  Q
    ||||| |||| | |||||||||||| || ||||||||||| ||||||| ||| |||||||||||    
T  43139771 cacaagcattctgacattgtgattgaccgatgtcacccaactctatgtcactcaagtgctaccc 43139708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 1272557 - 1272495
Alignment:
Q  149 aacacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgcta 211  Q
    ||||||| |||||| ||| | |||||||||||||||||| || ||||||| || |||||||||    
T  1272557 aacacaagcattgtgacaatttgattggccaatgtcaccaaactctatgtcacctaagtgcta 1272495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 30476536 - 30476500
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  30476536 cacaagcattgtgacattgtgattggccaatgtcacc 30476500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 47492109 - 47492073
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  47492109 cacaagcattgtgacattgtgattggccaatgtcacc 47492073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 2828703 - 2828582
Alignment:
Q  94 agagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatc 193  Q
    ||||||| |||||||||  |||||| || ||||||||||||   |||||||||||||||||| |||| | ||||||||||||||||||||||||||| ||    
T  2828703 agagttgggtgacattggccaatcacaatgtcacaatgcttctgaaagagagagaaacacaagcattttgacattgtgattggccaatgtcacccaactc 2828604  T
Q  194 tatgttacttaagtgctacccg 215  Q
    ||||| ||  ||||||||||||    
T  2828603 tatgtcacagaagtgctacccg 2828582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 15011406 - 15011306
Alignment:
Q  87 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 186  Q
    |||| |||||||||||||||||||  |||||| || |||||||||||||  |||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  15011406 gtgacatagagttgagtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatatcac 15011307  T
Q  187 c 187  Q
    |    
T  15011306 c 15011306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 6217251 - 6217347
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    |||||||||  |||||| || | |||||||||||  |||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||    
T  6217251 gtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgt 6217347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 14229380 - 14229491
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgttac 201  Q
    ||||||||| ||||||| || |||||||||||||  |||||||||||||||||| |||||| ||||||||||| |||||||||| |||| ||||||| ||    
T  14229380 gtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgatt-gccaatgtcatccaactctatgtcac 14229478  T
Q  202 ttaagtgctaccc 214  Q
      |||||||||||    
T  14229479 ccaagtgctaccc 14229491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 2894089 - 2893978
Alignment:
Q  87 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 186  Q
    |||| |||||||||  |||||||| ||||||| |  |||||||||||||  ||||||||||||| |||| |||||| | |||||||||||||||||||||    
T  2894089 gtgacatagagttggatgacattggtcaatcacagtgtcacaatgcttgtgaaagagagagaaatacaagcattgtgagattgtgattggccaatgtcac 2893990  T
Q  187 ccaaatctatgt 198  Q
    |||| |||||||    
T  2893989 ccaactctatgt 2893978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 29925618 - 29925696
Alignment:
Q  123 gtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgttac 201  Q
    |||| ||||||||  |||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||    
T  29925618 gtcagaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgttac 29925696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 38933687 - 38933593
Alignment:
Q  113 caatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagt 207  Q
    ||||||||| |||||||||||||  |||||||||||||||||| ||||||  |||||||||||| ||||||||||||| ||||||| || |||||    
T  38933687 caatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcacccaactctatgtcacctaagt 38933593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 102 - 197
Target Start/End: Complemental strand, 37961817 - 37961722
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatg 197  Q
    |||||||||| |||||| || | |||||||||||  ||||||||||||||||||||||| |  ||||||||| || ||||||||||||| ||||||    
T  37961817 gtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattatggcattgtgatcggtcaatgtcacccaactctatg 37961722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 37762019 - 37762113
Alignment:
Q  93 tagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||||||||||||||||| |||||| || ||| |||||||||  ||||||| |||||||||| |||||| | |||||||||| || ||||||||    
T  37762019 tagagttgagtgacattgaccaatcacaatgtcgcaatgcttgtgaaagagaaagaaacacaagcattgtgatattgtgattgacccatgtcacc 37762113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 14470619 - 14470700
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgt 183  Q
    |||||||||| |||||| || ||  |||||||||  ||||||||||||||||||||||||| |||||||||||||| |||||    
T  14470619 gtgacattgaccaatcacaatgttgcaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggctaatgt 14470700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 16514535 - 16514450
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||| |||||| || |||||||||||||  |||||||||||||||||| |||| |  ||| |||||||||||||||||||    
T  16514535 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattatggcatagtgattggccaatgtcacc 16514450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 6722051 - 6721977
Alignment:
Q  113 caatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||| || ||||||||| |||  |||||||||||||||||| |||||| | ||||||||||| ||||||||||    
T  6722051 caatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatgtcacc 6721977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 29508741 - 29508803
Alignment:
Q  125 cacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||||  |||||||||||||||||| |||||   |||||||||||||||||||||||    
T  29508741 cacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcacc 29508803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 24116032 - 24115950
Alignment:
Q  101 agtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgt 183  Q
    ||||| |||| ||||||| || ||| |||||||||  |||||| | ||||||||  |||||| ||||||||||||||||||||    
T  24116032 agtgatattggtcaatcacaatgtcgcaatgcttgtgaaagagtgtgaaacacaggcattgtaacattgtgattggccaatgt 24115950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 14464554 - 14464615
Alignment:
Q  74 ggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttg 135  Q
    |||||||||||  |||| ||||||||||||||||||| ||||||| || |||||||| ||||    
T  14464554 ggatagcacttgtgtgacatagagttgagtgacattggtcaatcacaatgtcacaatacttg 14464615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 9172993 - 9173093
Alignment:
Q  87 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 186  Q
    |||| ||||||||| ||||||||| |  |||| || | || |||||||  |||||| ||||||| |||| ||||||  ||||||||||||||||| ||||    
T  9172993 gtgacatagagttgggtgacattggttcatcagaatgccataatgcttataaaagaaagagaaatacaagcattgtggcattgtgattggccaatatcac 9173092  T
Q  187 c 187  Q
    |    
T  9173093 c 9173093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 14892371 - 14892297
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggc 177  Q
    ||||||||||||||||| || || ||||| |||   ||||||||||||| ||||||| ||| ||||||||||||||    
T  14892371 gtgacattgatcaatcacaatgttacaatacttatgaaagagagagaaagacaaaca-tgtgacattgtgattggc 14892297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 15011356 - 15011403
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    ||||| |||||| ||||||||||||||||||||||| ||| |||||||    
T  15011356 cacaagcattgtgacattgtgattggccaatgtcactcaactctatgt 15011403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 2828666 - 2828699
Alignment:
Q  157 cattgttacattgtgattggccaatgtcacccaa 190  Q
    |||||| |||||||||||||||||||||||||||    
T  2828666 cattgtgacattgtgattggccaatgtcacccaa 2828699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Original strand, 1992266 - 1992294
Alignment:
Q  164 acattgtgattggccaatgtcacccaaat 192  Q
    |||||||||||||||||||||||||||||    
T  1992266 acattgtgattggccaatgtcacccaaat 1992294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 2143943 - 2143995
Alignment:
Q  146 agaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    |||||||||| |||| | ||||||||||||||||| ||||| ||| |||||||    
T  2143943 agaaacacaagcattatgacattgtgattggccaacgtcactcaactctatgt 2143995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 8243390 - 8243500
Alignment:
Q  77 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 176  Q
    ||||||||  |||| ||||||||||||||||||||||||||| || | |||||||||||  |||||||||||||||||| ||||||  |||||||||||     
T  8243390 tagcacttgggtgacatagagttgagtgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattga 8243489  T
Q  177 ccaatgtcacc 187  Q
    |||| ||||||    
T  8243490 ccaacgtcacc 8243500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 35440996 - 35441081
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||| |||||| || |||||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  35440996 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 35441081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 39851066 - 39850961
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgttac 201  Q
    |||||||||| |||||| ||  | | ||||||||  |||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||| ||||    
T  39851066 gtgacattgaccaatcacaatattataatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatattac 39850967  T
Q  202 ttaagt 207  Q
     |||||    
T  39850966 ctaagt 39850961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 6296717 - 6296602
Alignment:
Q  101 agtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgtta 200  Q
    |||||||||  ||||| |||| |||||||| ||||  |||||||||||||||||| |||| | ||||||||||||| ||||||||||||| ||||||| |    
T  6296717 agtgacattagtcaattataatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 6296618  T
Q  201 cttaagtgctacccgt 216  Q
       |||||||||||||    
T  6296617 tccaagtgctacccgt 6296602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 5033272 - 5033187
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||| |||||| || |||||||||||||  |||||||||||||||||| ||||||  |||||||||||| ||||||||||    
T  5033272 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcacc 5033187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 4958710 - 4958627
Alignment:
Q  101 agtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtca 185  Q
    ||||||||||| |||||| || |||||||| ||||  ||||||||||||||||||||||| | ||||||||||||||||||||||    
T  4958710 agtgacattgaccaatcacaa-gtcacaatacttgtgaaagagagagaaacacaaacattatgacattgtgattggccaatgtca 4958627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 10086868 - 10086784
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 186  Q
    |||||||||| |||||| || ||||||||| |||  ||||||||||||||||||||||| | |||||||||||| ||||||||||    
T  10086868 gtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattgaccaatgtcac 10086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 45191154 - 45191239
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||||||||| ||||| || | ||||||||||   ||||||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  45191154 gtgacattgattaatcacaatgccacaatgcttatgaaagagagagaaacacaaacattgtaacattttgattggtcaatgtcacc 45191239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 8796533 - 8796449
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 186  Q
    |||||||||| |||||| || |||||||||||||  ||||| |||||||||||| |||||| |||||||||||| ||||| ||||    
T  8796533 gtgacattgaccaatcaaaatgtcacaatgcttgtgaaagatagagaaacacaagcattgtgacattgtgattgaccaatatcac 8796449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 34229777 - 34229679
Alignment:
Q  77 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattg 175  Q
    ||||||||  |||| ||||||||  ||||||||| ||||||| ||  ||||||||||||  |||||||||||||||||| |||| | ||||||||||||    
T  34229777 tagcacttgtgtgacatagagttaggtgacattggtcaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattctgacattgtgattg 34229679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 33841618 - 33841703
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||| |||||| |  |||||||||||||  |||||||||||||||||| ||||||  |||| ||||||| ||||||||||    
T  33841618 gtgacattgaccaatcacattgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattctgattggtcaatgtcacc 33841703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 34541805 - 34541924
Alignment:
Q  77 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 176  Q
    ||||||||  |||| ||| ||||| |||||||||  |||||||||  ||||||||||||  |||||||||||||||||| ||||||  |||| || | ||    
T  34541805 tagcacttgggtgacataaagttgggtgacattggccaatcataatatcacaatgcttgtgaaagagagagaaacacaagcattgtggcattttgctagg 34541904  T
Q  177 ccaatgtcacccaaatctat 196  Q
     ||||||||| ||| |||||    
T  34541905 tcaatgtcactcaactctat 34541924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 5667208 - 5667123
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||  |||| | || |||| ||||||||  ||||||||||||| |||| |||||| |||||||||||| |||||||||||    
T  5667208 gtgacattggccaattacaatgtcataatgcttgtgaaagagagagaaatacaagcattgtgacattgtgattgaccaatgtcacc 5667123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 2581895 - 2581853
Alignment:
Q  143 gagagaaacacaaacattgttacattgtgattggccaatgtca 185  Q
    ||||||||||||| ||||||  |||||||||||||||||||||    
T  2581895 gagagaaacacaagcattgtggcattgtgattggccaatgtca 2581853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 31159951 - 31159902
Alignment:
Q  113 caatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgt 162  Q
    ||||||||| |||||||||||||  ||||||||||||||| ||| |||||    
T  31159951 caatcataatgtcacaatgcttgtgaaagagagagaaacaaaaatattgt 31159902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 10086833 - 10086869
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  10086833 cacaaacattgtgacattgtgattggtcaatgtcacc 10086869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 34541865 - 34541801
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctacccg 215  Q
    ||||| |||||| | ||| ||||||||||||||||||||| | ||||| ||  ||||||||||||    
T  34541865 cacaagcattgtgatattatgattggccaatgtcacccaactttatgtcacccaagtgctacccg 34541801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 35031641 - 35031689
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaa 150  Q
    ||||||||||||||||| || ||| |||||||||  |||||||||||||    
T  35031641 gtgacattgatcaatcacaatgtcgcaatgcttgtgaaagagagagaaa 35031689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 29053326 - 29053437
Alignment:
Q  87 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 186  Q
    |||| ||||||||  |||||||||  |||||| || | | |||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||    
T  29053326 gtgacatagagtttggtgacattggccaatcacaatgcctcaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcac 29053425  T
Q  187 ccaaatctatgt 198  Q
    |||| |||||||    
T  29053426 ccaactctatgt 29053437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 27028795 - 27028905
Alignment:
Q  77 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 176  Q
    ||||||||  |||| ||||||||| || ||||||  |||||| || ||||||||||||   ||||||||||||||||||||||||| ||||||||||||     
T  27028795 tagcacttgggtgacatagagttgggtaacattggacaatcacaatgtcacaatgcttctgaaagagagagaaacacaaacattgtgacattgtgattga 27028894  T
Q  177 ccaatgtcacc 187  Q
    |||||||||||    
T  27028895 ccaatgtcacc 27028905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 4649463 - 4649335
Alignment:
Q  72 acggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagaga--aacacaaacattgttacattg 169  Q
    ||||| |||| || ||||| ||||||||  ||||||||| ||||||| || ||||| |||||||  |||||||||||  ||||||| ||||||  |||||    
T  4649463 acggacagcaattgagtgacatagagtttggtgacattggtcaatcacaatgtcacgatgcttgtgaaagagagagagaaacacaagcattgtagcattg 4649364  T
Q  170 tgattggccaatgtcacccaaatctatgt 198  Q
    |||||| |||||||||||||| |||||||    
T  4649363 tgattgaccaatgtcacccaactctatgt 4649335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 11016980 - 11016895
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||| |||||| || ||||||||| |||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  11016980 gtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 11016895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 15027653 - 15027568
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||| |||||| || |||||||||||||  |||||||||||||||||||||||||   ||||||||||| ||||||||||    
T  15027653 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggtattgtgattggtcaatgtcacc 15027568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 7671961 - 7672025
Alignment:
Q  125 cacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcaccca 189  Q
    |||||||||||  |||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  7671961 cacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcaccca 7672025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 38975916 - 38975835
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgt 183  Q
    ||||||||||||||| |||| | |||||||||||  |||||||||||||||||| ||||||  ||||||||||| |||||||    
T  38975916 gtgacattgatcaattataatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgt 38975835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 34854707 - 34854807
Alignment:
Q  87 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 186  Q
    |||| ||||||||  |||||||||  |||||| || | |||||||||||  ||||||| |||||||||||||||||  ||||||||||| ||||||||||    
T  34854707 gtgacatagagtttggtgacattggccaatcacaatgccacaatgcttgtgaaagagatagaaacacaaacattgtggcattgtgattgaccaatgtcac 34854806  T
Q  187 c 187  Q
    |    
T  34854807 c 34854807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 22764753 - 22764812
Alignment:
Q  128 aatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  22764753 aatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatatcacc 22764812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 41018245 - 41018340
Alignment:
Q  92 atagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||||||| |||||||||  |||||| || ||| |||||||||  ||||||||||||||| || ||||||  |||||||||||| ||||||||||    
T  41018245 atagagttgggtgacattggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtcacc 41018340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 42628395 - 42628310
Alignment:
Q  113 caatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    |||||| || ||| |||||||||  ||||||||||||||| || ||||||  |||||||||||| ||||||||||||| |||||||    
T  42628395 caatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtcacccaactctatgt 42628310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 48000848 - 48000769
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaat 181  Q
    |||||||||| |||||| || | |||||||  ||  |||||||||||||||||||||||||  |||||||||||||||||    
T  48000848 gtgacattgaccaatcacaatgccacaatgtctgtgaaagagagagaaacacaaacattgtggcattgtgattggccaat 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 45231913 - 45231962
Alignment:
Q  138 aaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||||||||||||| || |||||| ||||||||||||||||||||||||    
T  45231913 aaagagagagaaacaaaagcattgtaacattgtgattggccaatgtcacc 45231962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 41018290 - 41018224
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctacccgtg 217  Q
    ||||| |||||  ||||||||||||||||||||||||||| ||||||| |   ||||||||||||||    
T  41018290 cacaagcattgggacattgtgattggccaatgtcacccaactctatgtcatccaagtgctacccgtg 41018224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 4290656 - 4290571
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||  |||||| || |||||||| ||||  |||||||||||||||| | ||||||  ||||||||||| ||||| |||||    
T  4290656 gtgacattggccaatcacaatgtcacaattcttgtgaaagagagagaaacacgagcattgtggcattgtgattgaccaatatcacc 4290571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 30217504 - 30217564
Alignment:
Q  125 cacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtca 185  Q
    |||||||||||  ||||||||||||||| ||||||| | | |||||||||||| |||||||    
T  30217504 cacaatgcttgtgaaagagagagaaacataaacattttgatattgtgattggcgaatgtca 30217564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 10419533 - 10419480
Alignment:
Q  138 aaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaa 191  Q
    ||||||||||||||||||  ||||| ||||| |||||| |||||||||| ||||    
T  10419533 aaagagagagaaacacaagtattgtaacattatgattgaccaatgtcactcaaa 10419480  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 27028795 - 27028754
Alignment:
Q  146 agaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||| |||||| |||||||||||| |||||||||||    
T  27028795 agaaacacaagcattgtgacattgtgattgtccaatgtcacc 27028754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 11016945 - 11016981
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  11016945 cacaaacattgtgacattgtgattggtcaatgtcacc 11016981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 48000721 - 48000769
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaa 150  Q
    ||||||||||||||||| || | |||||||||||  |||||||||||||    
T  48000721 gtgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaa 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 10521847 - 10521972
Alignment:
Q  73 cggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtga 172  Q
    ||||||||||||  |||| ||||||||  |||||||||  |||||| || ||||||||||||   |||||||||||||||||| |||| | |||||||||    
T  10521847 cggatagcacttgggtgacatagagtttggtgacattggccaatcacaatgtcacaatgcttatgaaagagagagaaacacaagcattatgacattgtga 10521946  T
Q  173 ttggccaatgtcacccaaatctatgt 198  Q
    ||| |||||||||| ||| |||||||    
T  10521947 ttgaccaatgtcactcaactctatgt 10521972  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 24618628 - 24618737
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgttac 201  Q
    ||||||||||||||||| || |||| |||||||   |||||||||||||||||| |||||| ||||||||||||| ||| ||||||||| ||||||| ||    
T  24618628 gtgacattgatcaatcacaatgtcataatgcttatgaaagagagagaaacacaagcattgtgacattgtgattggtcaacgtcacccaactctatgtcac 24618727  T
Q  202 ttaagtgcta 211  Q
      ||||||||    
T  24618728 ccaagtgcta 24618737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 551182 - 551277
Alignment:
Q  92 atagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||||||| ||||||||| ||||||| || | ||||||| |||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  551182 atagagttgggtgacattggtcaatcacaatgccacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 551277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 12343211 - 12343115
Alignment:
Q  102 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    |||||||||  |||||| || |||||||||||||  |||||||||||||||||| ||||||  ||||||||||| | |||||||||||| |||||||    
T  12343211 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgactaatgtcacccaactctatgt 12343115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 31654380 - 31654304
Alignment:
Q  138 aaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgctaccc 214  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| | ||  |||||||||||    
T  31654380 aaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatatcacccaagtgctaccc 31654304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 17750992 - 17750928
Alignment:
Q  123 gtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||||||||||  ||||||||| ||| ||||||||||| |||||||||||| |||||||||||    
T  17750992 gtcacaatgcttgtgaaagagagataaatacaaacattgtgacattgtgattgaccaatgtcacc 17750928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 24587551 - 24587488
Alignment:
Q  123 gtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 186  Q
    |||||||||||||  ||| || ||||||||||| |||||| |||||||||||| ||||||||||    
T  24587551 gtcacaatgcttgtgaaaaagcgagaaacacaagcattgtgacattgtgattgaccaatgtcac 24587488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 2315325 - 2315443
Alignment:
Q  96 agttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatcta 195  Q
    ||||| ||||||||||||||||| || ||||||||| |||  |||||||| |||||| || |||| |   |||||||||   |||||||||| || ||||    
T  2315325 agttgggtgacattgatcaatcacaatgtcacaatgtttgtgaaagagagcgaaacataagcattatggtattgtgattattcaatgtcacctaactcta 2315424  T
Q  196 tgttacttaagtgctaccc 214  Q
    ||| ||  |||||||||||    
T  2315425 tgtcacacaagtgctaccc 2315443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 551227 - 551181
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatg 197  Q
    ||||||||||||  ||||||||||| |||||||||||||| ||||||    
T  551227 cacaaacattgtggcattgtgattgaccaatgtcacccaactctatg 551181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 10521905 - 10521851
Alignment:
Q  157 cattgttacattgtgattggccaatgtcacccaaatctatgttacttaagtgcta 211  Q
    |||||| |||||||||||||||||||||||| || ||||||| ||  ||||||||    
T  10521905 cattgtgacattgtgattggccaatgtcaccaaactctatgtcacccaagtgcta 10521851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 31654307 - 31654365
Alignment:
Q  77 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttg 135  Q
    ||||||||  |||||||||||||| |||||||||  |||||| || |||||||||||||    
T  31654307 tagcacttgggtgatatagagttgggtgacattggccaatcacaatgtcacaatgcttg 31654365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 13043546 - 13043489
Alignment:
Q  124 tcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaat 181  Q
    ||||||||||||  |||||||||||||||||| |||||| |||||  ||||| |||||    
T  13043546 tcacaatgcttgtgaaagagagagaaacacaagcattgtgacatttcgattgaccaat 13043489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 24618740 - 24618679
Alignment:
Q  74 ggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttg 135  Q
    |||||||||||  |||| ||||||||| ||||| |||| |||||| || |||||||||||||    
T  24618740 ggatagcacttgggtgacatagagttgggtgacgttgaccaatcacaatgtcacaatgcttg 24618679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 10521975 - 10521927
Alignment:
Q  87 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttg 135  Q
    |||| ||||||||||||||||||| ||||||| || |||| ||||||||    
T  10521975 gtgacatagagttgagtgacattggtcaatcacaatgtcataatgcttg 10521927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 12343176 - 12343212
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacc 187  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  12343176 cacaagcattgtgacattgtgattggccaatgtcacc 12343212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 49731 - 49826
Alignment:
Q  103 tgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    ||||||||| |||||| || |||||||||||||  ||||| |||||||||||| ||||||  ||||||||||||||||||||||| || |||||||    
T  49731 tgacattgaccaatcacaatgtcacaatgcttgtgaaagaaagagaaacacaagcattgtggcattgtgattggccaatgtcacctaactctatgt 49826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 7085 - 7159
Alignment:
Q  113 caatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||| || |||||||||||||  |||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  7085 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 7159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 2350 - 2265
Alignment:
Q  76 atagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattg 161  Q
    |||||||||  |||| ||||| ||| | ||||||||||||||| || |||||||||||||  |||||||||||||||||| |||||    
T  2350 atagcacttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 2350 - 2265
Alignment:
Q  76 atagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattg 161  Q
    |||||||||  |||| ||||| ||| | ||||||||||||||| || |||||||||||||  |||||||||||||||||| |||||    
T  2350 atagcacttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 2899 - 2975
Alignment:
Q  87 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgtt 163  Q
    |||| ||||||||| |||| ||||| |||||| || ||||||||| |||  ||||||||||||||||||||||||||    
T  2899 gtgacatagagttgggtgatattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattgtt 2975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 2949 - 2902
Alignment:
Q  151 cacaaacattgttacattgtgattggccaatgtcacccaaatctatgt 198  Q
    |||||||||||| ||||||||||||| |||| |||||||| |||||||    
T  2949 cacaaacattgtgacattgtgattggtcaatatcacccaactctatgt 2902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 27258 - 27332
Alignment:
Q  113 caatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 187  Q
    |||||| || |||| ||| ||||  ||||||||||||||| || ||||||  ||||||||||||||||| |||||    
T  27258 caatcacaatgtcataattcttgtgaaagagagagaaacagaagcattgtggcattgtgattggccaatatcacc 27332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 19154 - 19207
Alignment:
Q  107 attgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacatt 160  Q
    |||||||||||| || |||||||||||||   |||| |||||||||||||||||    
T  19154 attgatcaatcacaatgtcacaatgcttgtggaagaaagagaaacacaaacatt 19207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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