View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_low_7 (Length: 515)
Name: NF1247_low_7
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 114 - 486
Target Start/End: Complemental strand, 2653416 - 2653044
Alignment:
| Q |
114 |
tggtgataatgtttctgttgaggattgtaatggtagttcatcttattctcaagaatctgtgagtgaaatttggagtgaaaggatgaatgatcaagaatgg |
213 |
Q |
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| T |
2653416 |
tggtgataatgtgtctgttgaggattgtaatggtagttcatcttattctcaagaatctgtgagtgaaatttggagtgaaaggatgaatgatcaagaatgg |
2653317 |
T |
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| Q |
214 |
ataaaagagataactggagaggaatatttggatgatggttttacatttgttgatgaatcatatggttcttgctcttattatgaacctgttattcctacaa |
313 |
Q |
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| T |
2653316 |
ataaaagagataactggagaggaatatttggatgatggttttacatttgttgatgaatcatatggttcttgttcttattatgaacctgttcttcctacaa |
2653217 |
T |
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| Q |
314 |
tggtttctaatgagagtgattgcattgttgatactattccttttcatcttgaggaggattttgaatcatgtgaatgggaggttaataattacttcaatga |
413 |
Q |
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| T |
2653216 |
tggtttctaatgagagtgattgcattgttgatactattccttttcatcttgaggaggattttgaatcatgtgaatgggaggttaataattacttcaatga |
2653117 |
T |
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| Q |
414 |
atctttggagttttgaagaaatcattcatcatcaagtgaatgagtgagttagatgctaactaactgggtagtg |
486 |
Q |
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| T |
2653116 |
atctttggagttttgaagaaatcattcatcatcaagtgaatgagtgagttagatgctaactaactgggtagtg |
2653044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 2653474 - 2653442
Alignment:
| Q |
80 |
caccacagaagaaaagatcagtgaaagatgaat |
112 |
Q |
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| T |
2653474 |
caccacagaagaaaagatcagtgaaagatgaat |
2653442 |
T |
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