View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1247_low_8 (Length: 509)

Name: NF1247_low_8
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1247_low_8
NF1247_low_8
[»] chr1 (8 HSPs)
chr1 (99-509)||(4640551-4640951)
chr1 (458-509)||(4641736-4641787)
chr1 (161-211)||(11469509-11469559)
chr1 (461-509)||(27418186-27418234)
chr1 (460-505)||(29334241-29334286)
chr1 (460-505)||(43316384-43316429)
chr1 (384-423)||(1623946-1623986)
chr1 (465-509)||(38931337-38931381)
[»] chr5 (1 HSPs)
chr5 (161-349)||(4554858-4555045)
[»] chr6 (4 HSPs)
chr6 (159-226)||(34034404-34034470)
chr6 (30-133)||(34034539-34034642)
chr6 (458-508)||(34034192-34034242)
chr6 (458-508)||(34035018-34035068)
[»] chr4 (6 HSPs)
chr4 (30-133)||(22499548-22499651)
chr4 (159-226)||(22499720-22499786)
chr4 (457-508)||(22499122-22499173)
chr4 (161-211)||(6247214-6247264)
chr4 (458-508)||(22499948-22499998)
chr4 (470-505)||(34154821-34154856)
[»] chr8 (2 HSPs)
chr8 (161-211)||(12350221-12350271)
chr8 (461-505)||(40450963-40451007)
[»] chr2 (3 HSPs)
chr2 (264-310)||(41519719-41519765)
chr2 (461-505)||(36390984-36391028)
chr2 (460-505)||(7868117-7868162)
[»] chr3 (3 HSPs)
chr3 (461-505)||(45501271-45501315)
chr3 (461-506)||(8653697-8653742)
chr3 (461-505)||(44406936-44406980)
[»] chr7 (1 HSPs)
chr7 (461-505)||(30915761-30915805)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 99 - 509
Target Start/End: Complemental strand, 4640951 - 4640551
Alignment:
Q  99 tgaatggttttgtatcttgtgcaaagtagcagatcttcaattctgaatgaannnnnnnnatatgatgttatgtttttatttattcatgtttaactatttg 198  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||         |||||||||||| |||||||||||||||||||||||||||    
T  4640951 tgaatggttttgtatcttgtacaaagtagcagatcttcaattctgactgaattttttttctatgatgttatggttttatttattcatgtttaactatttg 4640852  T
Q  199 tcacttgtagagagaatcacaagtccatagaaattttgtcagtagagataagaggatttactacctcatacatggttctttgttttaattgtgaaatttt 298  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4640851 tcacttgtagagagaatcataagtccatagaaattttgtcagtagagacaagaggatttactacctcatacatggttctttgttttaattgtgaaatttt 4640752  T
Q  299 gtcattgaaatttcaatgacagtgataaggcaatgaattttggaaaatcaannnnnnnnaggtttgaaggagatgaagaaaaagagttggagcagcagcg 398  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||    
T  4640751 gtcattgaaatttcaatgacagtgataaggcaatggattttggaaaatcaattttttttaggtttgaaggagatgaagaaaaagagttggagcaacagcg 4640652  T
Q  399 tttgtgggtgagtggtggtgagtgtgagaaannnnnnnggtgttgaatgtctatgataatctatttgatccaatggttgaaaattactttcccatggtgg 498  Q
    ||||||          |||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4640651 tttgtg----------ggtgagtgtgagaaaattttttggtgttgaatgtctatgataatctatttgatctaatggttgaaaattactttcccatggtgg 4640562  T
Q  499 gaaacaattcc 509  Q
    |||||||||||    
T  4640561 gaaacaattcc 4640551  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 458 - 509
Target Start/End: Original strand, 4641736 - 4641787
Alignment:
Q  458 tctatttgatccaatggttgaaaattactttcccatggtgggaaacaattcc 509  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4641736 tctatttgatccaatggttgaaaattactttcccttggtgggaaacaattcc 4641787  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 11469509 - 11469559
Alignment:
Q  161 tgatgttatgtttttatttattcatgtttaactatttgtcacttgtagaga 211  Q
    |||||||||||||| ||||||| |||||||| ||||||||| |||||||||    
T  11469509 tgatgttatgttttaatttatttatgtttaattatttgtcatttgtagaga 11469559  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 509
Target Start/End: Complemental strand, 27418234 - 27418186
Alignment:
Q  461 atttgatccaatggttgaaaattactttcccatggtgggaaacaattcc 509  Q
    |||||||| ||||||| |||||||||||  |||||||||||||||||||    
T  27418234 atttgatctaatggttaaaaattactttttcatggtgggaaacaattcc 27418186  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 505
Target Start/End: Complemental strand, 29334286 - 29334241
Alignment:
Q  460 tatttgatccaatggttgaaaattactttcccatggtgggaaacaa 505  Q
    ||||||||| ||||| | ||| ||||||||||||||||||||||||    
T  29334286 tatttgatctaatgggtaaaatttactttcccatggtgggaaacaa 29334241  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 505
Target Start/End: Complemental strand, 43316429 - 43316384
Alignment:
Q  460 tatttgatccaatggttgaaaattactttcccatggtgggaaacaa 505  Q
    ||||||||| ||||| | ||| ||||||||||||||||||||||||    
T  43316429 tatttgatcaaatggataaaatttactttcccatggtgggaaacaa 43316384  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 423
Target Start/End: Original strand, 1623946 - 1623986
Alignment:
Q  384 gttggagcagcagc-gtttgtgggtgagtggtggtgagtgt 423  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  1623946 gttggatcagcagccgtttgtgggtgagtggtggtgagtgt 1623986  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 509
Target Start/End: Complemental strand, 38931381 - 38931337
Alignment:
Q  465 gatccaatggttgaaaattactttcccatggtgggaaacaattcc 509  Q
    |||| ||||||| ||| | ||||||||||||||||||||||||||    
T  38931381 gatctaatggttcaaattgactttcccatggtgggaaacaattcc 38931337  T

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Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 161 - 349
Target Start/End: Complemental strand, 4555045 - 4554858
Alignment:
Q  161 tgatgttatgtttttatttattcatgtttaactatttgtcacttgtagagagaatcacaagtccatagaaattttgtcagtagagataagaggatttact 260  Q
    |||||||||||||| ||||||| |||||||| ||||||||| ||||||||| ||||||| | |||  |||||||||||  || ||| ||| | || ||||    
T  4555045 tgatgttatgttttaatttatttatgtttaattatttgtcatttgtagagaaaatcacatgcccaaggaaattttgtccctatagaaaagggtatctact 4554946  T
Q  261 acctcatacatggttctttgttttaattgtgaaattttgtcattgaaatttcaatgacagtgataaggcaatgaattttggaaaatcaa 349  Q
    |||||||||| |||||||  ||||||| |||||||||||  |||||| ||  | |||| |||| |||| ||||  ||||||||||||||    
T  4554945 acctcatacacggttcttcattttaatagtgaaattttgctattgaagttgaactgacggtgacaagggaatg-gttttggaaaatcaa 4554858  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 34034470 - 34034404
Alignment:
Q  159 tatgatgttatgtttttatttattcatgtttaactatttgtcacttgtagagagaatcacaagtccat 226  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  34034470 tatgatgtta-gttttaatttattcatgtttaattatttgtcacttgtagagagaatcacatgtccat 34034404  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 34034642 - 34034539
Alignment:
Q  30 ggtttttcagtttgggggaattggattcagggattagagagaagcagaagctcaatgaaaattttgtcatgaatggttttgtatcttgtgcaaagtagca 129  Q
    |||||||||||||||||||||||  ||||| | ||| ||||||||| ||| |||||| || ||||  ||||||||||||| ||| |||| ||||||||||    
T  34034642 ggtttttcagtttgggggaattgtcttcagaggttaaagagaagcacaagttcaatggaatttttaacatgaatggttttttatgttgtacaaagtagca 34034543  T
Q  130 gatc 133  Q
    ||||    
T  34034542 gatc 34034539  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 458 - 508
Target Start/End: Complemental strand, 34034242 - 34034192
Alignment:
Q  458 tctatttgatccaatggttgaaaattactttcccatggtgggaaacaattc 508  Q
    ||||||||||||||||||| ||||| |||||||||||||||||| ||||||    
T  34034242 tctatttgatccaatggtttaaaataactttcccatggtgggaagcaattc 34034192  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 458 - 508
Target Start/End: Original strand, 34035018 - 34035068
Alignment:
Q  458 tctatttgatccaatggttgaaaattactttcccatggtgggaaacaattc 508  Q
    ||||||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  34035018 tctatttgatccaatggtttaaaataactttcccatgatgggaaacaattc 34035068  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 22499548 - 22499651
Alignment:
Q  30 ggtttttcagtttgggggaattggattcagggattagagagaagcagaagctcaatgaaaattttgtcatgaatggttttgtatcttgtgcaaagtagca 129  Q
    |||||||||||||||||||||||  ||||| | ||| ||||||||| ||| |||||| || ||||  ||||||||||||| ||| |||| ||||||||||    
T  22499548 ggtttttcagtttgggggaattgtcttcagaggttaaagagaagcacaagttcaatggaatttttaacatgaatggttttttatgttgtacaaagtagca 22499647  T
Q  130 gatc 133  Q
    ||||    
T  22499648 gatc 22499651  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 22499720 - 22499786
Alignment:
Q  159 tatgatgttatgtttttatttattcatgtttaactatttgtcacttgtagagagaatcacaagtccat 226  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  22499720 tatgatgtta-gttttaatttattcatgtttaattatttgtcacttgtagagagaatcacatgtccat 22499786  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 457 - 508
Target Start/End: Complemental strand, 22499173 - 22499122
Alignment:
Q  457 atctatttgatccaatggttgaaaattactttcccatggtgggaaacaattc 508  Q
    |||||||||||||||||||| ||||| ||||||||||| ||| |||||||||    
T  22499173 atctatttgatccaatggtttaaaataactttcccatgatggaaaacaattc 22499122  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 6247214 - 6247264
Alignment:
Q  161 tgatgttatgtttttatttattcatgtttaactatttgtcacttgtagaga 211  Q
    |||||||||||||| ||||||| |||||||| ||||||||| |||||||||    
T  6247214 tgatgttatgttttaatttatttatgtttaattatttgtcatttgtagaga 6247264  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 508
Target Start/End: Original strand, 22499948 - 22499998
Alignment:
Q  458 tctatttgatccaatggttgaaaattactttcccatggtgggaaacaattc 508  Q
    ||||||||||||||||||| ||||| ||||||| ||||||| |||||||||    
T  22499948 tctatttgatccaatggtttaaaataactttcctatggtggaaaacaattc 22499998  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 505
Target Start/End: Complemental strand, 34154856 - 34154821
Alignment:
Q  470 aatggttgaaaattactttcccatggtgggaaacaa 505  Q
    |||||||||||| |||||||||||||||||||||||    
T  34154856 aatggttgaaaaatactttcccatggtgggaaacaa 34154821  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 12350271 - 12350221
Alignment:
Q  161 tgatgttatgtttttatttattcatgtttaactatttgtcacttgtagaga 211  Q
    |||||||||||||| ||||||| |||||||| ||||||||| |||||||||    
T  12350271 tgatgttatgttttaatttatttatgtttaattatttgtcatttgtagaga 12350221  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 505
Target Start/End: Original strand, 40450963 - 40451007
Alignment:
Q  461 atttgatccaatggttgaaaattactttcccatggtgggaaacaa 505  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||||    
T  40450963 atttgatctaatggttaaaatttactttcccatggtgggaaacaa 40451007  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 41519719 - 41519765
Alignment:
Q  264 tcatacatggttctttgttttaattgtgaaattttgtcattgaaatt 310  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||||    
T  41519719 tcatacatggttcttcattttaattgtgaaattttgccattgaaatt 41519765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 505
Target Start/End: Complemental strand, 36391028 - 36390984
Alignment:
Q  461 atttgatccaatggttgaaaattactttcccatggtgggaaacaa 505  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||||    
T  36391028 atttgatctaatggttaaaatttactttcccatggtgggaaacaa 36390984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 505
Target Start/End: Original strand, 7868117 - 7868162
Alignment:
Q  460 tatttgatccaatggttgaaaattactttcccatggtgggaaacaa 505  Q
    ||||||||| | ||||| ||| ||||||||||||||||||||||||    
T  7868117 tatttgatctagtggttaaaatttactttcccatggtgggaaacaa 7868162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 505
Target Start/End: Original strand, 45501271 - 45501315
Alignment:
Q  461 atttgatccaatggttgaaaattactttcccatggtgggaaacaa 505  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||    
T  45501271 atttgatccaatggtttaaatttactttcccatggtggaaaacaa 45501315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 506
Target Start/End: Original strand, 8653697 - 8653742
Alignment:
Q  461 atttgatccaatggttgaaaattactttcccatggtgggaaacaat 506  Q
    |||||||| ||||||| ||| |||||||| ||||||||||||||||    
T  8653697 atttgatcaaatggttaaaatttactttctcatggtgggaaacaat 8653742  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 461 - 505
Target Start/End: Original strand, 44406936 - 44406980
Alignment:
Q  461 atttgatccaatggttgaaaattactttcccatggtgggaaacaa 505  Q
    |||||||| ||||| | ||| ||||||||||||||||||||||||    
T  44406936 atttgatctaatgggtaaaatttactttcccatggtgggaaacaa 44406980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 461 - 505
Target Start/End: Complemental strand, 30915805 - 30915761
Alignment:
Q  461 atttgatccaatggttgaaaattactttcccatggtgggaaacaa 505  Q
    |||||||| ||||| | ||| ||||||||||||||||||||||||    
T  30915805 atttgatctaatgggtaaaatttactttcccatggtgggaaacaa 30915761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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