View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_low_9 (Length: 506)
Name: NF1247_low_9
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 91 - 496
Target Start/End: Original strand, 5466578 - 5466983
Alignment:
| Q |
91 |
agggtggcactccttaacatnnnnnnngatctgaacgatccttccaattgcctttcctcttgggttgggaaggattgctgtgactggattggtatacaat |
190 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5466578 |
agggtggcactccttaacataaaaaaagatctgaacgatccttccaattgcctttcctcttgggttgggaaggattgctgtgactggattggtatacaat |
5466677 |
T |
|
| Q |
191 |
gtgacaataaaacaggtaacattcttaagcttgatctccagcaccttcatatctgcacaacagatatatttttacagtctcccttgggaggtaagataaa |
290 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5466678 |
gtgacaataaaacaggtaacattcttaagcttgatctccagccccttcatatctgcacaacagatatatttttacagtctcccttgggaggtaagataaa |
5466777 |
T |
|
| Q |
291 |
tccttcattacttgacttaaaacatttgagtcacttggacttaagctataatgatttcaaaggagttcccattccagaatttattggttctctcaatacg |
390 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5466778 |
tccttcattacttgacttaaaacatttgagtcacttggacttgagctataatgatttcaaaggagttcccattcctgaatttattggttctctcaatacg |
5466877 |
T |
|
| Q |
391 |
ctcaattaccttgatttatcccatgcaaatttttctggaatggtccctcctcatctcggaaatttgtcaaatttgcatcatcatgatgtctctggcccaa |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5466878 |
ctcaattaccttgatttatcccatgcaaatttttctggaatggtccctcctcatctcggaaatttgtcaaatttgcatcatcttgatgtctctggcccaa |
5466977 |
T |
|
| Q |
491 |
gtataa |
496 |
Q |
| |
|
|||||| |
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|
| T |
5466978 |
gtataa |
5466983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 280 - 483
Target Start/End: Original strand, 5481511 - 5481714
Alignment:
| Q |
280 |
ggtaagataaatccttcattacttgacttaaaacatttgagtcacttggacttaagctataatgatttcaaaggagttcccattccagaatttattggtt |
379 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5481511 |
ggtaagataaatccttcattagttaacttaaaacatttgagtcacttggacctaagctttaatgatttcaaaggagttcccattccagaatttattggtt |
5481610 |
T |
|
| Q |
380 |
ctctcaatacgctcaattaccttgatttatcccatgcaaatttttctggaatggtccctcctcatctcggaaatttgtcaaatttgcatcatcatgatgt |
479 |
Q |
| |
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||||||||| ||||||||||||||| ||||| ||||||||||| | |||||||||| ||||||||| || ||| |||||||||||||| ||| |||| | |
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| T |
5481611 |
ctctcaatatgctcaattaccttgacttatctaatgcaaattttacaggaatggtccttcctcatcttggcaatctgtcaaatttgcattatcttgatat |
5481710 |
T |
|
| Q |
480 |
ctct |
483 |
Q |
| |
|
|||| |
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|
| T |
5481711 |
ctct |
5481714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 255 - 483
Target Start/End: Original strand, 5495317 - 5495545
Alignment:
| Q |
255 |
tatatttttacagtctcccttgggaggtaagataaatccttcattacttgacttaaaacatttgagtcacttggacttaagctataatgatttcaaagga |
354 |
Q |
| |
|
|||||||| || ||||||||| || |||||||||||||||||||| |||||| ||||| ||||||||||||||| |||| |||||||||||| ||||| |
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| T |
5495317 |
tatattttcactgtctccctttggtggtaagataaatccttcattggctgacttgaaacacttgagtcacttggacctaagatataatgatttcgaagga |
5495416 |
T |
|
| Q |
355 |
gttcccattccagaatttattggttctctcaatacgctcaattaccttgatttatcccatgcaaatttttctggaatggtccctcctcatctcggaaatt |
454 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| || || ||||||||||||||||||| |||||||| || |||| |
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| T |
5495417 |
gttcccattccagaatttattggttccctcaatatgctcaattaccttgacttatcagattcatatttttctggaatggtcccccctcatcttggcaatt |
5495516 |
T |
|
| Q |
455 |
tgtcaaatttgcatcatcatgatgtctct |
483 |
Q |
| |
|
||||||| |||||| ||| |||| ||||| |
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|
| T |
5495517 |
tgtcaaacttgcattatcttgatatctct |
5495545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 280 - 489
Target Start/End: Original strand, 5489560 - 5489769
Alignment:
| Q |
280 |
ggtaagataaatccttcattacttgacttaaaacatttgagtcacttggacttaagctataatgatttcaaaggagttcccattccagaatttattggtt |
379 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| ||||||||||||||| ||||||||| ||| || |||||| ||||||||||||||||||||||| |
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|
| T |
5489560 |
ggtaagataaatccttcattggctgacttgaaacacttgagtcacttggacctaagctatagtgactttgaaggagctcccattccagaatttattggtt |
5489659 |
T |
|
| Q |
380 |
ctctcaatacgctcaattaccttgatttatcccatgcaaatttttctggaatggtccctcctcatctcggaaatttgtcaaatttgcatcatcatgatgt |
479 |
Q |
| |
|
|||||||| ||||||||||||||| || ||| |||||||||| ||||||||||||| || |||| || ||||| |||||||| || ||| |||| | |
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|
| T |
5489660 |
atctcaatatgctcaattaccttgacttgtccaatgcaaatttcactggaatggtcccgactaatcttggcaatttatcaaatttacactatcttgatat |
5489759 |
T |
|
| Q |
480 |
ctctggccca |
489 |
Q |
| |
|
|||| ||||| |
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|
| T |
5489760 |
ctctagccca |
5489769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 284 - 466
Target Start/End: Original strand, 5484379 - 5484561
Alignment:
| Q |
284 |
agataaatccttcattacttgacttaaaacatttgagtcacttggacttaagctataatgatttcaaaggagttcccattccagaatttattggttctct |
383 |
Q |
| |
|
|||||||||||||||| ||||| | ||| |||||||||||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||||| |
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|
| T |
5484379 |
agataaatccttcattcgccgacttgacacacttgagtcacttggacttaagcttcaatgatttcgaaggaattcccattccagaacatattggttctct |
5484478 |
T |
|
| Q |
384 |
caatacgctcaattaccttgatttatcccatgcaaatttttctggaatggtccctcctcatctcggaaatttgtcaaatttgc |
466 |
Q |
| |
|
||| | | | ||||||||||| |||| ||||||||||| ||||||| |||||| |||||| || |||||||||||||||| |
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|
| T |
5484479 |
caaaatgttgaattaccttgacctatcaaatgcaaattttactggaattgtccctaatcatcttggcaatttgtcaaatttgc |
5484561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 287 - 483
Target Start/End: Original strand, 5476442 - 5476638
Alignment:
| Q |
287 |
taaatccttcattacttgacttaaaacatttgagtcacttggacttaagctataatgatttcaaaggagttcccattccagaatttattggttctctcaa |
386 |
Q |
| |
|
||||||||||||| | |||| ||||| ||||||||||||||| | || || ||| | ||||||||| || |||||||||||||||||||||||||||| |
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|
| T |
5476442 |
taaatccttcattggcttacttgaaacacttgagtcacttggacctgagttacaataacttcaaaggaatttccattccagaatttattggttctctcaa |
5476541 |
T |
|
| Q |
387 |
tacgctcaattaccttgatttatcccatgcaaatttttctggaatggtccctcctcatctcggaaatttgtcaaatttgcatcatcatgatgtctct |
483 |
Q |
| |
|
|| ||| ||||| ||||| ||||| || |||| ||| | |||||||||||| || |||| || ||||||||||||||||| |||| |||| ||||| |
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|
| T |
5476542 |
tatgctgaattatcttgacttatctaattcaaaatttacaggaatggtccctactgatcttggtaatttgtcaaatttgcaccatcttgatatctct |
5476638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 5481358 - 5481467
Alignment:
| Q |
118 |
gatctgaacgatccttccaattgcctttcctcttgggttgggaaggattgctgtgactggattggtatacaatgtgacaataaaacaggtaacattctta |
217 |
Q |
| |
|
||||| || ||||||| |||||||||||| || ||||||||||| ||||| ||| ||||||||||||| |||||||| || |||| ||| ||||||||| |
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|
| T |
5481358 |
gatctcaatgatccttacaattgcctttcttcatgggttgggaaagattgttgtcgctggattggtatagaatgtgactatcaaactggttacattctta |
5481457 |
T |
|
| Q |
218 |
agcttgatct |
227 |
Q |
| |
|
|||||||||| |
|
|
| T |
5481458 |
agcttgatct |
5481467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 5476247 - 5476350
Alignment:
| Q |
94 |
gtggcactccttaacatnnnnnnngatctgaacgatccttccaattgcctttcctcttgggttgggaaggattgctgtgactggattggtatacaatgtg |
193 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||||||||||||||| || ||||| ||| | ||||||||| | |||| ||||| |||||| |
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|
| T |
5476247 |
gtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatgggtcggggaagattgctgtaattggaagggtattgaatgtg |
5476346 |
T |
|
| Q |
194 |
acaa |
197 |
Q |
| |
|
|||| |
|
|
| T |
5476347 |
acaa |
5476350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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