View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248-INSERTION-1 (Length: 196)
Name: NF1248-INSERTION-1
Description: NF1248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248-INSERTION-1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 34119979 - 34120167
Alignment:
| Q |
8 |
aagacaccagtgtccttgtgacgtccgagaccaagagccagatgagggtagggacaaggtggataatggttgagtcttatattgctggtgttatgtataa |
107 |
Q |
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| T |
34119979 |
aagacaccagtgtccttgtgacgtccgagaccaagagccagatgagggtagggacaaggtggataatggttgagtcttatattgctggtgttatgtataa |
34120078 |
T |
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| Q |
108 |
agaagtcacggaacctatttggtactaaacccaaactcattgcaataagttccatcaatttatatgctagtttttctacttcttctgca |
196 |
Q |
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| T |
34120079 |
agaagtcacggaacctatttggtactaaacccaaactcattgcaataagttccatcaatttatatgctagtttttctacttcttctgca |
34120167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 13627131 - 13627313
Alignment:
| Q |
8 |
aagacaccagtgtccttgtgacgtccgagaccaagagccagatgagggtagggacaaggtggataatggttgagtcttatattgctggtgttatgtataa |
107 |
Q |
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|||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13627131 |
aagacatcagtgtccttgtgatgtccaagaccaagagccagatgagtgtagggacaaggtggataatggttgagtcttatgttgctggtgttatgtataa |
13627230 |
T |
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| Q |
108 |
agaagtcacggaacctatttggtactaaacccaaactcattgcaataagttccatcaatttatatgctagtttttctacttct |
190 |
Q |
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| T |
13627231 |
agaagtcacggatcctatttggtactaaacctaaactcactgcaataagttccataaatttatatgctagtttctccacttct |
13627313 |
T |
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Target: chr8 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 39312886 - 39312720
Alignment:
| Q |
8 |
aagacaccagtgtccttgtgacgtccgagaccaagagccagatgagggtagggacaaggtggataatggttgagtcttatattgctggtgttatgtataa |
107 |
Q |
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|||||| ||||||| |||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39312886 |
aagacatcagtgtctttgtgatgtccaagaccaagagccagatgagtgtagggacaaggtggataatggttgagtcttatgttgctggtgttatgtataa |
39312787 |
T |
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| Q |
108 |
agaagtcacggaacctatttggtactaaacccaaactcattgcaataagttccatcaatttatatgc |
174 |
Q |
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| T |
39312786 |
agaagtcatagaccctatttggtactaaacctaaactcactgcaataagttccataaatttatatgc |
39312720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 47508568 - 47508439
Alignment:
| Q |
8 |
aagacaccagtgtccttgtgacgtccgagaccaagagccagatgagggtagggacaaggtggataatggttgagtcttatattgctggtgttatgtataa |
107 |
Q |
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|||||| |||||||||||| | |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47508568 |
aagacatcagtgtccttgtcatgtccaagaccaagagccagatgagtgtagggacaaggtggataatggttgagtcttatgttgctggtgttatgtataa |
47508469 |
T |
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| Q |
108 |
agaagtcacggaacctatttggtactaaac |
137 |
Q |
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|||||||||||| |||||||| |||||||| |
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| T |
47508468 |
agaagtcacggaccctatttgatactaaac |
47508439 |
T |
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