View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1248-INSERTION-3 (Length: 479)

Name: NF1248-INSERTION-3
Description: NF1248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1248-INSERTION-3
NF1248-INSERTION-3
[»] chr4 (1 HSPs)
chr4 (6-479)||(1792381-1792855)


Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 6 - 479
Target Start/End: Complemental strand, 1792855 - 1792381
Alignment:
Q  6 caggaaatctgcatgaattggaatccctattaaagggcagtatatggtaggtaacattctgagtaaatagcaaagaaagaatgtctcattcacacacaag 105  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1792855 caggaaatctgcatgaattggaatccctattaaagcgcagtatatggtaggtaacattctgagtaaatagcaaagaaagaatgtctcattcacacacaag 1792756  T
Q  106 cttaggtatgcgtgcatttgaagaataagaatgtgggttttcatggagaatagagaatcaagggggtgaagcacaaggagttatttgtgttttgcacatt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1792755 cttaggtatgcgtgcatttgaagaataagaatgtgggttttcatggagaatagagaatcaagggggtgaagcacaaggagttatttgtgttttgcacatt 1792656  T
Q  206 ctttgagccaagggttttgtcattgccacgtttacccatgttttcctctaaatttgacaacgattaagaaagtcccaagaataaaagac-nnnnnnngtg 304  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  1792655 ctttgaaccaagggttttgtcattgccacgtttacccatgttttcctctaaatttgacaacgattaagaaagtcccaagaataaaagacaaaaaaaagtg 1792556  T
Q  305 tgattcaatgatatctttatcattttcgtacttaagtgttatgcaaatttgtataagcttccatgccttttttgcaaagtttcatgccttatgggaattg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1792555 tgattcaatgatatctttatcattttcgtacttaagtgttatgcaaatttgtataagcttccatgccttttttgcaaagtttcatgccttatgggaattg 1792456  T
Q  405 tgagtttttgcataaattatgcaaccnnnnnnngtgttttatttcaggtcaatttggggaagtgcttttcaatat 479  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||| |||||||||||||||||||    
T  1792455 tgagtttttgcataaattatgcaacctttttttgtgttttatttcaggtcaatttagggaagtgcttttcaatat 1792381  T

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