View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248-INSERTION-5 (Length: 243)
Name: NF1248-INSERTION-5
Description: NF1248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248-INSERTION-5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 8167437 - 8167675
Alignment:
| Q |
8 |
ttttccctatcgagaaagtgtttaatgacggtgttagggttagggtaaccacaaacgtagagtttttcgtttggtgaagtgatgatcattgcagtttttg |
107 |
Q |
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| T |
8167437 |
ttttccctatcgagaaagtgtttaatgacggtgttagggttagggtaaccacaaacgtagagttttccgtttggtgaagtgatgatcattgcagtttttg |
8167536 |
T |
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| Q |
108 |
cattgcaaagaatagatagttctgtaactttcttgaagrgccctagtttgcgttttgagaaggaatcgcggggcttgtttgattgttctgctttcttgat |
207 |
Q |
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| T |
8167537 |
cattgcataggatagatagttctgtaactttgttgaagagccctagtttgcgttttgagaaggtatcgaggggcttgtttgattgttctgctttcttgat |
8167636 |
T |
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| Q |
208 |
tttaatggt---tctcttgcgtttgttgttgctttttgt |
243 |
Q |
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| T |
8167637 |
tttaatggttgatctcttacgtttgttgttgctttttgt |
8167675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 2e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 50707504 - 50707718
Alignment:
| Q |
8 |
ttttccctatcgagaaagtgtttaatgacggtgttagggttagggtaaccacaaacgtagagtttttcgtttggtgaagtgatgatcattgcagtttttg |
107 |
Q |
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|||||| |||||| ||||||||||||||| |||| | |||||||||| || || | | ||| |||| |||||||||||||||||||| ||| ||||||| |
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| T |
50707504 |
ttttccttatcgaaaaagtgtttaatgacagtgtcatggttagggtatccgcatgcatggagatttttgtttggtgaagtgatgatcagtgcggtttttg |
50707603 |
T |
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| Q |
108 |
cattgcaaagaatagatagttctgtaactttcttgaagrgccctagtttgcgttttgagaaggaatcgcggggcttgtttgattgttctgctttcttgat |
207 |
Q |
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| T |
50707604 |
cattgcatagaatggataattctgttactttgttgaagagtcctagtttgcgctttgaaaaggtatcacgccgcttgttcgatggctttgctttcttgat |
50707703 |
T |
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| Q |
208 |
tttaatggttctctt |
222 |
Q |
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| T |
50707704 |
ttcaatggttttctt |
50707718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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