View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1248-INSERTION-6 (Length: 299)
Name: NF1248-INSERTION-6
Description: NF1248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248-INSERTION-6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 14820053 - 14820219
Alignment:
| Q |
8 |
ctggagccataggatcattgcttagcacaacaattctctaccctcttgatacctgcaagactaagtatcaagctgaggcacgttctaagggtaacagaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14820053 |
ctggagccataggatcattgcttagcacaacaattctctaccctcttgatacctgcaagactaagtatcaagctgaggcacgttctaagggtaacagaaa |
14820152 |
T |
|
| Q |
108 |
gtacaagtatgtttaacaaccctttgattattcattttatgatttcttgcttttgatcctgttaccc |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14820153 |
gtacaagtatgtttaacaaccctttgattattcattttatgatttcttgcttttgatcctgttaccc |
14820219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 15267053 - 15267219
Alignment:
| Q |
8 |
ctggagccataggatcattgcttagcacaacaattctctaccctcttgatacctgcaagactaagtatcaagctgaggcacgttctaagggtaacagaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15267053 |
ctggagccataggatcattgcttagcacaacaattctctaccctcttgatacctgcaagactaagtatcaagctgaggcacgttctaagggtaacagaaa |
15267152 |
T |
|
| Q |
108 |
gtacaagtatgtttaacaaccctttgattattcattttatgatttcttgcttttgatcctgttaccc |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15267153 |
gtacaagtatgtttaacaaccctttgattattcattttatgatttcttgcttttgatcctgttaccc |
15267219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 15273838 - 15274004
Alignment:
| Q |
8 |
ctggagccataggatcattgcttagcacaacaattctctaccctcttgatacctgcaagactaagtatcaagctgaggcacgttctaagggtaacagaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15273838 |
ctggagccataggatcattgcttagcacaacaattctctaccctcttgatacttgcaagactaagtatcaagctgaggcacgttctaagggtaacagaaa |
15273937 |
T |
|
| Q |
108 |
gtacaagtatgtttaacaaccctttgattattcattttatgatttcttgcttttgatcctgttaccc |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15273938 |
gtacaagtatgtttaacaaccctttgattattcattttatgatttcttgcttttgatcctgttaccc |
15274004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 17502666 - 17502500
Alignment:
| Q |
8 |
ctggagccataggatcattgcttagcacaacaattctctaccctcttgatacctgcaagactaagtatcaagctgaggcacgttctaagggtaacagaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17502666 |
ctggagccataggatcattgcttagcacaacaattctctaccctcttgatacttgcaagactaagtatcaagctgaggcacgttctaagggtaacagaaa |
17502567 |
T |
|
| Q |
108 |
gtacaagtatgtttaacaaccctttgattattcattttatgatttcttgcttttgatcctgttaccc |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17502566 |
gtacaagtatgtttaacaaccctttgattattcattttatgatttcttgcttttgatcctgttaccc |
17502500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University