View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248-INSERTION-7 (Length: 397)
Name: NF1248-INSERTION-7
Description: NF1248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248-INSERTION-7 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0408 (1 HSPs) |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 42156545 - 42156168
Alignment:
| Q |
7 |
ataataaacatgtgtgcctatcattatttgatcaagctttcacaatgttagtgtttaataaagttcttctttgatgattgtcaatctaaatagttttcct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42156545 |
ataataaacatgtgtgcctatcattatttgatcaagctttcacaatgttagtgtttaataaagttcttctttgatgattgtcaatctaaatagttttcct |
42156446 |
T |
|
| Q |
107 |
ttgattagatgtacaaattttgtttgagatacctttcccattcttctctggactctgaagttagatattggcataatcagagcttgtttgaccaaacnnn |
206 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42156445 |
ttgattagatgtataaattttgtttgagatacctttcccattcttctctggactctgaagttagatattggcataatcagagcttgtttgaccaaacttt |
42156346 |
T |
|
| Q |
207 |
nnnnncaactctcatctccttaaggtgatagagcatgcaattagactcaaataaataatttagatatttaatttagaagtaaaatttatattggtttgtc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42156345 |
tttttcaactctcatctccttaaggtgatagagcatgcaattagactcaaataaa-------------taatttagaagtaaaatttatattggtttgtc |
42156259 |
T |
|
| Q |
307 |
ttttcttttaattgttttagttggaaattttagctggatctttagtctctaggcctgttaggttattatctattaccactcttatatgtaa |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42156258 |
ttttcttttaattgttttagttggaaattttagctggatctttagtctctaggcctgttaggttattatctattaccactcttatatgtaa |
42156168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 38010861 - 38010799
Alignment:
| Q |
246 |
attagactcaaataaataatttagatatttaatttagaagtaaaatttatattggtttgtcttt |
309 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||||||| |
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| T |
38010861 |
attagactcaaataaataatttacctatttaatttagaagtataa-ttatattagtttgtcttt |
38010799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 357
Target Start/End: Complemental strand, 25315261 - 25315137
Alignment:
| Q |
232 |
tgatagagcatgcaattagactcaaataaataatttagatatttaatttagaagtaaaatttatattggtttgtcttttcttttaattg-ttttagttgg |
330 |
Q |
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||||| || |||||||| |||||||||||||||||||||||||||| |||||||| || ||||||| | |||| ||| | |||| ||| |||||||||| |
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| T |
25315261 |
tgataaaggatgcaatttgactcaaataaataatttagatatttaa-ttagaagtgcaa-ttatattaggttgtttttccatttagttgtttttagttgg |
25315164 |
T |
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| Q |
331 |
aaattttagctggatctttagtctcta |
357 |
Q |
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| |||||| ||||||||||||||||| |
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| T |
25315163 |
accttttagttggatctttagtctcta |
25315137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 1640055 - 1640099
Alignment:
| Q |
247 |
ttagactcaaataaataatttagatatttaatttagaagtaaaat |
291 |
Q |
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|||||||||||||||||||| || |||||| ||||||||| |||| |
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| T |
1640055 |
ttagactcaaataaataattaaggtatttagtttagaagtgaaat |
1640099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 9665067 - 9665001
Alignment:
| Q |
242 |
tgcaattagactcaaataaataatttagatatttaatttagaagtaaaatttatattggtttgtcttt |
309 |
Q |
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|||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||| |||||||||| |
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| T |
9665067 |
tgcaattagattaaaataaataatttagctatttaatttagaagtaaaa-ttatattagtttgtcttt |
9665001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 359
Target Start/End: Original strand, 6889405 - 6889522
Alignment:
| Q |
242 |
tgcaattagactcaaataaataatttagatatttaatttagaagtaaaatttatattggtttgtcttttcttttaattgtt-ttagttggaaattttagc |
340 |
Q |
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||||| |||||||||||||||||||||| |||||| |||| |||||||| |||| || |||||||||| |||| | ||||| ||||||||| ||| || |
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| T |
6889405 |
tgcaactagactcaaataaataatttagctatttagtttataagtaaaa-ttatgttagtttgtctttcctttgagttgttgttagttggacctttaagt |
6889503 |
T |
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| Q |
341 |
tggatctttagtctctagg |
359 |
Q |
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||| |||||||||| |||| |
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| T |
6889504 |
tgggtctttagtctttagg |
6889522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 27065611 - 27065668
Alignment:
| Q |
252 |
ctcaaataaataatttagatatttaatttagaagtaaaatttatattggtttgtctttt |
310 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||| |||| |||||| |
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| T |
27065611 |
ctcaaataaataatttagatatttaatttataagtaaaa-ttatattagtttatctttt |
27065668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 27086714 - 27086771
Alignment:
| Q |
252 |
ctcaaataaataatttagatatttaatttagaagtaaaatttatattggtttgtctttt |
310 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||| |||| |||||| |
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| T |
27086714 |
ctcaaataaataatttagatatttaatttataagtaaaa-ttatattagtttatctttt |
27086771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 10047 - 10087
Alignment:
| Q |
242 |
tgcaattagactcaaataaataatttagatatttaatttag |
282 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
10047 |
tgcaactagactcaaataaataatttagatatttagtttag |
10087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 22707 - 22786
Alignment:
| Q |
244 |
caattagactcaaataaataatttagatatttaatttagaagtaaaatttatattggtttgtcttttcttttaattgtttt |
324 |
Q |
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|
|||||||||| |||||||| ||||||||||| | |||| |||||||| |||| || || ||||||| |||| ||||||||| |
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|
| T |
22707 |
caattagacttaaataaatgatttagatattaagtttataagtaaaa-ttattttagtctgtctttcctttaaattgtttt |
22786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 14099705 - 14099745
Alignment:
| Q |
242 |
tgcaattagactcaaataaataatttagatatttaatttag |
282 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
14099705 |
tgcaactagactcaaataaataatttagatatttagtttag |
14099745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 3726542 - 3726485
Alignment:
| Q |
248 |
tagactcaaataaataatttagatatttaatttagaagtaaaatttatattggtttgtc |
306 |
Q |
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|||||||||||||||||||||| |||||| || ||||||| || ||||||| ||||||| |
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| T |
3726542 |
tagactcaaataaataatttagttatttatttgagaagtataa-ttatattagtttgtc |
3726485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 34144450 - 34144491
Alignment:
| Q |
232 |
tgatagagcatgcaattagactcaaataaataatttagatat |
273 |
Q |
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|||||||| |||||||||| ||||||| |||||||||||||| |
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| T |
34144450 |
tgatagagaatgcaattaggctcaaatgaataatttagatat |
34144491 |
T |
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