View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248-INSERTION-9 (Length: 416)
Name: NF1248-INSERTION-9
Description: NF1248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248-INSERTION-9 |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 212 - 416
Target Start/End: Complemental strand, 27329460 - 27329256
Alignment:
| Q |
212 |
acttaattcaggaagtaatgcacacaaagcaatgcacaattttaaaggaaaaagtaagaatgatgtttacgaaaacggaaaatgagcttggtcaacttga |
311 |
Q |
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| T |
27329460 |
acttaattcaggaagtaatgtacagaaagcaatgctcaattctaaaggaaaaagtaagaatgatgcttaacaaaacggaaaatgagcttactcaacttga |
27329361 |
T |
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| Q |
312 |
gtttattgatgtattgcaaaggcttggagtttcttaccattttaacaatgaaattagggacatattggataacatttacaacaaacaatcattcatcttg |
411 |
Q |
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| T |
27329360 |
gcttattgatgtattgcaaaggcttggagtgtcttaccattttaacaatgaaattagggacatattggataacatttacaacaaacaaacattcaagttg |
27329261 |
T |
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| Q |
412 |
aagaa |
416 |
Q |
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||||| |
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| T |
27329260 |
aagaa |
27329256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 220 - 416
Target Start/End: Complemental strand, 27446961 - 27446765
Alignment:
| Q |
220 |
caggaagtaatgcacacaaagcaatgcacaattttaaaggaaaaagtaagaatgatgtttacgaaaacggaaaatgagcttggtcaacttgagtttattg |
319 |
Q |
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| T |
27446961 |
caggaagtaaagcacacaaaggaattcttaatgctaaaggaaaaagtaagaatgatgtttaacaaaatggaaaatgagattgatcaacttgaatttattg |
27446862 |
T |
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| Q |
320 |
atgtattgcaaaggcttggagtttcttaccattttaacaatgaaattagggacatattggataacatttacaacaaacaatcattcatcttgaagaa |
416 |
Q |
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| T |
27446861 |
atgtattgcaaaggcttggtgtggcttatcaatttaacaatgaaatagggaaaatattggacaacatttacaactcacaaacatccatgttgaagaa |
27446765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 289 - 416
Target Start/End: Original strand, 18839585 - 18839712
Alignment:
| Q |
289 |
gaaaatgagcttggtcaacttgagtttattgatgtattgcaaaggcttggagtttcttaccattttaacaatgaaattagggacatattggataacattt |
388 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
18839585 |
gaaaacgagcttgatcaacttgagtttattgatgtattgcaaaggattggagtgtcttaccattttaacaatgaaattagggatatattggacaacattt |
18839684 |
T |
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| Q |
389 |
acaacaaacaatcattcatcttgaagaa |
416 |
Q |
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| T |
18839685 |
acaacaaacaaacatccaagttgaagaa |
18839712 |
T |
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