View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12480_high_6 (Length: 225)

Name: NF12480_high_6
Description: NF12480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12480_high_6
NF12480_high_6
[»] chr3 (10 HSPs)
chr3 (20-212)||(23385689-23385881)
chr3 (20-189)||(23351374-23351543)
chr3 (20-212)||(23439253-23439445)
chr3 (20-212)||(23498403-23498595)
chr3 (20-206)||(23477960-23478146)
chr3 (20-212)||(23446654-23446846)
chr3 (61-212)||(23404060-23404211)
chr3 (61-212)||(23462679-23462830)
chr3 (61-208)||(23453434-23453581)
chr3 (20-180)||(23471821-23471981)
[»] scaffold0201 (1 HSPs)
scaffold0201 (20-212)||(10824-11016)
[»] chr4 (1 HSPs)
chr4 (123-180)||(12897546-12897603)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 23385881 - 23385689
Alignment:
Q  20 ttatctagggctacaaatcttgaaagagtatatctccgtcgatgtgaaagcctgcgtcaactccatccatccatcttttctctccctcgaattacatatc 119  Q
    ||||||||||||| ||||||||| ||| || |||||     |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  23385881 ttatctagggctataaatcttgacagaatacatctctcggaatgtgaaagcctgcgtcagctccatccatccatcttttctctccctcgaattatatatc 23385782  T
Q  120 tagatttaagaggttgcataaagattggaagccttaaatccaacattcattcaaaatctctttgtgaactcttacttgatggttgttcatctc 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| |||||  |||||||||||||||    
T  23385781 tagatttaagaggttgcataaagattgaaagccttaaatccaacattcattcaaaatctctctgtgtacttttactcaatggttgttcatctc 23385689  T

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Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 23351543 - 23351374
Alignment:
Q  20 ttatctagggctacaaatcttgaaagagtatatctccgtcgatgtgaaagcctgcgtcaactccatccatccatcttttctctccctcgaattacatatc 119  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||| || ||    
T  23351543 ttatctagggctacaaatcttgaaagagtatatctctgtcaatgtgaaagcctgcgtcagctccatccatccatcttttctctccctcgacttatatttc 23351444  T
Q  120 tagatttaagaggttgcataaagattggaagccttaaatccaacattcattcaaaatctctttgtgaact 189  Q
    ||||||||  || |||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||    
T  23351443 tagatttagaagattgcataaagattgaaagccttaaaaccaacattcattcaaaatctctttgtaaact 23351374  T

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Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 23439445 - 23439253
Alignment:
Q  20 ttatctagggctacaaatcttgaaagagtatatctccgtcgatgtgaaagcctgcgtcaactccatccatccatcttttctctccctcgaattacatatc 119  Q
    |||||||||||||||||||||| ||||| || |||| ||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| ||    
T  23439445 ttatctagggctacaaatcttggaagagcatctctctgtcaatgtgaaagcttgcgtcagctccatccatccatcttttctctccctcgacttacatttc 23439346  T
Q  120 tagatttaagaggttgcataaagattggaagccttaaatccaacattcattcaaaatctctttgtgaactcttacttgatggttgttcatctc 212  Q
    |||||||| |||||||||| |  |||| |||||||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  23439345 tagatttaggaggttgcattactattgaaagccttaaaacgaacattcattcaaaatctcttcgtgaactcttactggatggttgttcatctc 23439253  T

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Target: chr3; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 23498595 - 23498403
Alignment:
Q  20 ttatctagggctacaaatcttgaaagagtatatctccgtcgatgtgaaagcctgcgtcaactccatccatccatcttttctctccctcgaattacatatc 119  Q
    ||||||| ||||||||||||| | |||||||||||   || ||||||||||||| |||| |||||| | || |||||||||||||||    ||| |||||    
T  23498595 ttatctaaggctacaaatcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttcgatcttttctctccctgatcttagatatc 23498496  T
Q  120 tagatttaagaggttgcataaagattggaagccttaaatccaacattcattcaaaatctctttgtgaactcttacttgatggttgttcatctc 212  Q
    |||||||| ||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  23498495 tagatttacgaggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctctttgtgaactcttactcgatggttgttcttctc 23498403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 23478146 - 23477960
Alignment:
Q  20 ttatctagggctacaaatcttgaaagagtatatctccgtcgatgtgaaagcctgcgtcaactccatccatccatcttttctctccctcgaattacatatc 119  Q
    ||||||| ||||||||||||| | |||||||||||   || ||||||||||||| |||| |||||| | || |||||||||||||||    ||| |||||    
T  23478146 ttatctaaggctacaaatcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttctatcttttctctccctgatcttagatatc 23478047  T
Q  120 tagatttaagaggttgcataaagattggaagccttaaatccaacattcattcaaaatctctttgtgaactcttacttgatggttgtt 206  Q
    |||||||| ||||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23478046 tagatttacgaggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctcttcgtgaactcttacttgatggttgtt 23477960  T

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Target: chr3; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 23446846 - 23446654
Alignment:
Q  20 ttatctagggctacaaatcttgaaagagtatatctccgtcgatgtgaaagcctgcgtcaactccatccatccatcttttctctccctcgaattacatatc 119  Q
    ||||||| ||||||||||||| | |||||||||||   || ||||||||||||| |||| |||||||| ||||||||||||||||||    ||| |||||    
T  23446846 ttatctaaggctacaaatcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccatccttccatcttttctctccctgatcttagatatc 23446747  T
Q  120 tagatttaagaggttgcataaagattggaagccttaaatccaacattcattcaaaatctctttgtgaactcttacttgatggttgttcatctc 212  Q
    |||||||| |||  |||| |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||    
T  23446746 tagatttacgagactgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctcttcgtgaactcttactcgatggttgtgcatctc 23446654  T

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Target: chr3; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 23404211 - 23404060
Alignment:
Q  61 atgtgaaagcctgcgtcaactccatccatccatcttttctctccctcgaattacatatctagatttaagaggttgcataaagattggaagccttaaatcc 160  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| | ||  ||||||||| ||||||||||||||||  |||| |||||||||| |     
T  23404211 atgtgaaagcttgcgtcaactccatccatccatcttttctctccctcaacttcaatatctagacttaagaggttgcataagtattgaaagccttaaaaca 23404112  T
Q  161 aacattcattcaaaatctctttgtgaactcttacttgatggttgttcatctc 212  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||||    
T  23404111 aacattcattcaaaatctctttgtcaactcttactcaatggttgttcatctc 23404060  T

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Target: chr3; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 23462830 - 23462679
Alignment:
Q  61 atgtgaaagcctgcgtcaactccatccatccatcttttctctccctcgaattacatatctagatttaagaggttgcataaagattggaagccttaaatcc 160  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| | ||  ||||||||| ||||||||||||||||  |||| |||||||||| |     
T  23462830 atgtgaaagcttgcgtcaactccatccatccatcttttctctccctcaacttcaatatctagacttaagaggttgcataagtattgaaagccttaaaaca 23462731  T
Q  161 aacattcattcaaaatctctttgtgaactcttacttgatggttgttcatctc 212  Q
    ||||||||||||||||||||| || ||||||||||  |||||||||||||||    
T  23462730 aacattcattcaaaatctcttcgtcaactcttactcaatggttgttcatctc 23462679  T

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Target: chr3; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 61 - 208
Target Start/End: Complemental strand, 23453581 - 23453434
Alignment:
Q  61 atgtgaaagcctgcgtcaactccatccatccatcttttctctccctcgaattacatatctagatttaagaggttgcataaagattggaagccttaaatcc 160  Q
    ||||||||||||| |||| |||||||| |||||||| | |||||||    ||| ||||||||||||| ||||||||| |||||||| |||||||||| ||    
T  23453581 atgtgaaagcctgtgtcagctccatccttccatcttctgtctccctgatcttagatatctagatttacgaggttgcaaaaagattgaaagccttaaaacc 23453482  T
Q  161 aacattcattcaaaatctctttgtgaactcttacttgatggttgttca 208  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  23453481 aacattcattcaaaatctcttcgtgaactcttactcgatggttgttca 23453434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 23471981 - 23471821
Alignment:
Q  20 ttatctagggctacaaatcttgaaagagtatatctccgtcgatgtgaaagcctgcgtcaactccatccatccatcttttctctccctcgaattacatatc 119  Q
    ||||||||||||||||||||||||| |||| |||||  |  |||||||||||||||||| |||||||||| ||||||||||||||||||| |||     |    
T  23471981 ttatctagggctacaaatcttgaaaaagtacatctctataaatgtgaaagcctgcgtcatctccatccatacatcttttctctccctcgacttattgtac 23471882  T
Q  120 tagatttaagaggttgcataaagattggaagccttaaatccaacattcattcaaaatctct 180  Q
    |||||||| |||||||||||||||| | |||||||||| |||| ||||||||||| |||||    
T  23471881 tagatttaggaggttgcataaagatcgaaagccttaaaaccaatattcattcaaattctct 23471821  T

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Target: scaffold0201 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 11016 - 10824
Alignment:
Q  20 ttatctagggctacaaatcttgaaagagtatatctccgtcgatgtgaaagcctgcgtcaactccatccatccatcttttctctccctcgaattacatatc 119  Q
    ||||| ||||||||||||||| ||||  ||||||||  || |||| ||||||||||||| |||||| |||||||| |||||||||||||| ||   ||||    
T  11016 ttatccagggctacaaatcttcaaagtctatatctcactcaatgtaaaagcctgcgtcagctccatacatccatcctttctctccctcgacttgattatc 10917  T
Q  120 tagatttaagaggttgcataaagattggaagccttaaatccaacattcattcaaaatctctttgtgaactcttacttgatggttgttcatctc 212  Q
    |||||||| ||||||||||||| |||| |||||||||| || | |||||||||||||||||  ||| ||| |||||  |||||||||||||||    
T  10916 tagatttacgaggttgcataaatattgaaagccttaaagccgagattcattcaaaatctctccgtgtacttttactcaatggttgttcatctc 10824  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 12897546 - 12897603
Alignment:
Q  123 atttaagaggttgcataaagattggaagccttaaatccaacattcattcaaaatctct 180  Q
    |||||| |||||||| |||||||| |||||| ||| | ||||||||||||||||||||    
T  12897546 atttaaaaggttgcaaaaagattgaaagcctgaaaactaacattcattcaaaatctct 12897603  T

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