View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12480_low_1 (Length: 883)

Name: NF12480_low_1
Description: NF12480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12480_low_1
NF12480_low_1
[»] chr2 (15 HSPs)
chr2 (248-575)||(27918766-27919092)
chr2 (458-608)||(16195533-16195680)
chr2 (758-799)||(25894964-25895005)
chr2 (548-613)||(35512424-35512487)
chr2 (758-800)||(25895213-25895255)
chr2 (250-334)||(26275631-26275714)
chr2 (683-739)||(29966604-29966660)
chr2 (337-384)||(29966924-29966971)
chr2 (760-803)||(39442289-39442332)
chr2 (760-803)||(44556580-44556623)
chr2 (769-803)||(36217249-36217283)
chr2 (821-859)||(42166176-42166214)
chr2 (758-803)||(5009410-5009455)
chr2 (758-799)||(5009469-5009510)
chr2 (457-522)||(29966766-29966831)
[»] chr3 (16 HSPs)
chr3 (228-372)||(13494786-13494930)
chr3 (457-566)||(19121675-19121784)
chr3 (758-799)||(47891417-47891458)
chr3 (758-798)||(25848287-25848327)
chr3 (760-804)||(39253785-39253829)
chr3 (545-595)||(2120756-2120806)
chr3 (758-803)||(25848535-25848580)
chr3 (758-803)||(28813892-28813937)
chr3 (762-803)||(30954987-30955028)
chr3 (762-803)||(30970799-30970840)
chr3 (758-803)||(40286293-40286338)
chr3 (766-803)||(40286492-40286529)
chr3 (758-799)||(47069527-47069568)
chr3 (762-803)||(47069583-47069624)
chr3 (758-799)||(47069766-47069807)
chr3 (758-803)||(47891357-47891402)
[»] chr5 (21 HSPs)
chr5 (240-613)||(25954836-25955206)
chr5 (457-582)||(16687724-16687849)
chr5 (758-803)||(17400599-17400644)
chr5 (758-803)||(17400844-17400889)
chr5 (758-803)||(25456330-25456375)
chr5 (758-803)||(16327153-16327198)
chr5 (758-803)||(16327336-16327381)
chr5 (758-803)||(17400784-17400829)
chr5 (758-803)||(20928053-20928098)
chr5 (762-803)||(23662120-23662161)
chr5 (758-797)||(23662176-23662215)
chr5 (758-797)||(23796373-23796412)
chr5 (758-795)||(10827403-10827440)
chr5 (758-803)||(12713124-12713169)
chr5 (758-803)||(12774388-12774433)
chr5 (758-799)||(19550364-19550405)
chr5 (758-803)||(20927900-20927945)
chr5 (758-799)||(28559234-28559275)
chr5 (760-801)||(28559475-28559516)
chr5 (758-799)||(35461435-35461476)
chr5 (758-799)||(35461733-35461774)
[»] chr4 (31 HSPs)
chr4 (317-610)||(17743151-17743442)
chr4 (424-582)||(16404639-16404797)
chr4 (758-804)||(45038413-45038459)
chr4 (758-803)||(7246047-7246092)
chr4 (759-804)||(46196164-46196209)
chr4 (759-803)||(45038301-45038345)
chr4 (527-589)||(6115895-6115957)
chr4 (758-803)||(41083109-41083154)
chr4 (758-799)||(41083351-41083392)
chr4 (758-803)||(44057300-44057345)
chr4 (758-803)||(53863372-53863417)
chr4 (763-803)||(11884671-11884711)
chr4 (758-798)||(26782353-26782393)
chr4 (756-803)||(7246107-7246154)
chr4 (497-591)||(16301230-16301324)
chr4 (760-803)||(21322009-21322052)
chr4 (324-375)||(21546322-21546373)
chr4 (760-802)||(2469955-2469997)
chr4 (270-364)||(6115654-6115748)
chr4 (821-867)||(16404374-16404420)
chr4 (758-800)||(25056193-25056235)
chr4 (761-799)||(40395098-40395136)
chr4 (758-803)||(53863555-53863601)
chr4 (758-803)||(2470145-2470190)
chr4 (774-803)||(12498873-12498902)
chr4 (758-799)||(14984068-14984109)
chr4 (467-556)||(23692323-23692412)
chr4 (319-384)||(39938137-39938202)
chr4 (758-803)||(40147199-40147244)
chr4 (758-803)||(40395154-40395199)
chr4 (758-803)||(46196355-46196400)
[»] chr1 (11 HSPs)
chr1 (18-90)||(11814897-11814968)
chr1 (459-610)||(34487886-34488035)
chr1 (244-375)||(34487682-34487813)
chr1 (826-876)||(17048205-17048255)
chr1 (758-800)||(34173316-34173358)
chr1 (758-803)||(52913194-52913240)
chr1 (758-803)||(2633560-2633605)
chr1 (762-803)||(18608583-18608624)
chr1 (758-803)||(18608633-18608678)
chr1 (758-799)||(26879698-26879739)
chr1 (758-799)||(33650397-33650438)
[»] chr8 (19 HSPs)
chr8 (758-799)||(24909701-24909742)
chr8 (238-350)||(3318525-3318636)
chr8 (285-384)||(12842638-12842737)
chr8 (544-595)||(12842893-12842944)
chr8 (758-799)||(6220182-6220223)
chr8 (758-803)||(6220420-6220465)
chr8 (758-799)||(6220480-6220521)
chr8 (758-803)||(27052631-27052676)
chr8 (758-799)||(41151404-41151445)
chr8 (758-803)||(41151460-41151505)
chr8 (759-803)||(27052523-27052567)
chr8 (756-803)||(6220238-6220285)
chr8 (760-803)||(24909643-24909686)
chr8 (240-350)||(33929251-33929360)
chr8 (457-579)||(35104331-35104452)
chr8 (758-799)||(9399815-9399856)
chr8 (271-375)||(20704126-20704231)
chr8 (758-799)||(24827356-24827397)
chr8 (758-803)||(27052463-27052508)
[»] scaffold0018 (3 HSPs)
scaffold0018 (760-803)||(161459-161502)
scaffold0018 (760-799)||(161403-161442)
scaffold0018 (761-803)||(161645-161687)
[»] chr6 (19 HSPs)
chr6 (228-326)||(14760382-14760480)
chr6 (758-803)||(10356499-10356544)
chr6 (758-803)||(21598500-21598545)
chr6 (758-799)||(35225397-35225438)
chr6 (759-803)||(35050704-35050748)
chr6 (758-803)||(10356316-10356361)
chr6 (758-803)||(21598683-21598728)
chr6 (758-799)||(21598743-21598784)
chr6 (467-595)||(14760615-14760743)
chr6 (760-799)||(10356260-10356299)
chr6 (758-801)||(12341258-12341301)
chr6 (823-870)||(22562736-22562783)
chr6 (824-866)||(33546284-33546326)
chr6 (762-803)||(9982725-9982766)
chr6 (758-799)||(9982967-9983008)
chr6 (758-803)||(17342678-17342723)
chr6 (758-799)||(21598444-21598485)
chr6 (758-803)||(35050818-35050863)
chr6 (758-803)||(35225453-35225498)
[»] chr7 (22 HSPs)
chr7 (758-803)||(29710375-29710420)
chr7 (242-298)||(2167064-2167120)
chr7 (760-803)||(42313030-42313073)
chr7 (758-803)||(3198266-3198311)
chr7 (821-858)||(4514190-4514227)
chr7 (758-799)||(6694767-6694808)
chr7 (758-803)||(11975502-11975547)
chr7 (758-803)||(11975678-11975723)
chr7 (758-799)||(11975738-11975779)
chr7 (758-803)||(29710557-29710602)
chr7 (758-803)||(30869637-30869682)
chr7 (271-367)||(24676975-24677071)
chr7 (827-870)||(4122969-4123012)
chr7 (665-739)||(5459557-5459632)
chr7 (271-350)||(31270614-31270693)
chr7 (824-870)||(5459449-5459495)
chr7 (317-375)||(12223071-12223129)
chr7 (758-800)||(27576628-27576670)
chr7 (457-511)||(39228072-39228126)
chr7 (761-803)||(42312814-42312856)
chr7 (758-803)||(4048257-4048302)
chr7 (758-799)||(27280613-27280654)
[»] scaffold0002 (1 HSPs)
scaffold0002 (763-797)||(12110-12144)
[»] scaffold0194 (1 HSPs)
scaffold0194 (824-867)||(6725-6768)
[»] scaffold0669 (1 HSPs)
scaffold0669 (825-859)||(4775-4809)
[»] scaffold0279 (1 HSPs)
scaffold0279 (758-800)||(1232-1274)
[»] scaffold0157 (1 HSPs)
scaffold0157 (774-803)||(21575-21604)


Alignment Details
Target: chr2 (Bit Score: 85; Significance: 5e-40; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 248 - 575
Target Start/End: Complemental strand, 27919092 - 27918766
Alignment:
Q  248 acaacacaaacaaattattctgtttcaccctacaatctgaggttagtccaatctccttgcaattctaaaagatttttcactgtaatcttacaagattata 347  Q
    ||||||||| ||||||| | || ||||||| ||||||||| ||||||  | || ||||||| ||||||   |||||||| | |||||  ||||||||| |    
T  27919092 acaacacaaccaaattagtttggttcaccccacaatctgatgttagtttagtccccttgcagttctaaggaatttttcattataatcacacaagattaca 27918993  T
Q  348 attgctccaacacacaagtcagagacttatttgcctcggacatggaggatttttacaatcaaggtttaaca-ataagttgtatgtgcttacactttatga 446  Q
    |||||||||| |||||||||||||||||  |||| ||  ||| | |||| || ||||||||  |||||||| |||| ||  ||||| ||||||||||| |    
T  27918992 attgctccaatacacaagtcagagacttccttgc-tcatacaag-aggacttatacaatcagagtttaacagataaatttaatgtgtttacactttataa 27918895  T
Q  447 ctcaaagaaaggtaaactagctttaagtttaagaaacttcttacacttatgaaattctatgataataggtttgtaaaaaatttctaagtgcttctgcgct 546  Q
     ||| |||   |||||| ||||||||||| ||||||||||| ||||| | ||||||||| |||| || ||| |||| || ||| |||||| || || |||    
T  27918894 atcagagagtagtaaacaagctttaagttcaagaaacttctgacactcaagaaattctaagatactaagttcgtaagaactttttaagtgtttgtgtgct 27918795  T
Q  547 tttgaatttgatagagttttagcacttgt 575  Q
    ||||||||||| |||||||||||||||||    
T  27918794 tttgaatttgacagagttttagcacttgt 27918766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 458 - 608
Target Start/End: Complemental strand, 16195680 - 16195533
Alignment:
Q  458 gtaaactagctttaagtttaagaaacttcttacacttatgaaattctatgataataggtttgtaaaaaatttctaagtgcttctgcgcttttgaatttga 557  Q
    |||||||| ||||||| ||||||||||||| ||||| | |||||| || |||| || |||||||| || |||| ||||| ||  ||  |||| |||||||    
T  16195680 gtaaactaactttaagcttaagaaacttctgacactaa-gaaattttaagatattatgtttgtaagaattttcaaagtgtttgagcaattttaaatttga 16195582  T
Q  558 tagagttttagcacttgtaaaatatgtgtagtctcttataatttcttcaaa 608  Q
    |||||||||  ||||||||||| || |||| |||||  |||||||||||||    
T  16195581 tagagttttgacacttgtaaaagatatgtaatctct--taatttcttcaaa 16195533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 758 - 799
Target Start/End: Complemental strand, 25895005 - 25894964
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  25895005 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 25894964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 548 - 613
Target Start/End: Complemental strand, 35512487 - 35512424
Alignment:
Q  548 ttgaatttgatagagttttagcacttgtaaaatatgtgtagtctcttataatttcttcaaatttct 613  Q
    |||||||||||||||||||  ||||||||||||||||||||| ||||||  |||||||||| ||||    
T  35512487 ttgaatttgatagagttttgacacttgtaaaatatgtgtagtatcttat--tttcttcaaacttct 35512424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 758 - 800
Target Start/End: Original strand, 25895213 - 25895255
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggact 800  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  25895213 acttaaaggaccaatctgttacaaacctcaaacttaaaggact 25895255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 250 - 334
Target Start/End: Complemental strand, 26275714 - 26275631
Alignment:
Q  250 aacacaaacaaattattctgtttcaccctacaatctgaggttagtccaatctccttgcaattctaaaagatttttcactgtaatc 334  Q
    ||||||||||| ||||  || ||||||| |||||  |||||||||||| ||| |||||| |||||| |||||||||||| |||||    
T  26275714 aacacaaacaa-ttatcttggttcaccccacaattcgaggttagtccagtctacttgcacttctaagagatttttcactataatc 26275631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 683 - 739
Target Start/End: Complemental strand, 29966660 - 29966604
Alignment:
Q  683 aagctttgattcatatttgaaaactttgccttaaatgaataatggtgttgaatagta 739  Q
    ||||||||||||||||||||||||||||| | || || ||||||  |||||||||||    
T  29966660 aagctttgattcatatttgaaaactttgcttcaattggataatgtcgttgaatagta 29966604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 384
Target Start/End: Complemental strand, 29966971 - 29966924
Alignment:
Q  337 acaagattataattgctccaacacacaagtcagagacttatttgcctc 384  Q
    ||||||||| |||||||||||||||||||||||| ||||  |||||||    
T  29966971 acaagattacaattgctccaacacacaagtcagatacttccttgcctc 29966924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 760 - 803
Target Start/End: Complemental strand, 39442332 - 39442289
Alignment:
Q  760 ttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||| || ||||||||||||||||||||||||||| |||||||    
T  39442332 ttaaatgatcaatttgttacaaatctcaaacttaaatgacttat 39442289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 760 - 803
Target Start/End: Complemental strand, 44556623 - 44556580
Alignment:
Q  760 ttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||| |||||| ||||||| ||||||||||||||||||||    
T  44556623 ttaaaggatcaatttattacaaacctcaaacttaaaggacttat 44556580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 803
Target Start/End: Original strand, 36217249 - 36217283
Alignment:
Q  769 caatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||||||||| ||||||||||||||||||||    
T  36217249 caatttgttacaaacctcaaacttaaaggacttat 36217283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 821 - 859
Target Start/End: Original strand, 42166176 - 42166214
Alignment:
Q  821 ttatttgtttgtttatgcacgtggtcagaagaaaacaaa 859  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  42166176 ttatttgtttgtttatgcacatggtcagaagaagacaaa 42166214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 5009410 - 5009455
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||||| |||| ||||||||| ||||||||||||| ||||||    
T  5009410 acttaaaggatcaatatgttacaaacctcaaacttaaagtacttat 5009455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 799
Target Start/End: Original strand, 5009469 - 5009510
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||    
T  5009469 acttaaaagaccaatatgttacaaacctcaaacttaaaggac 5009510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 522
Target Start/End: Complemental strand, 29966831 - 29966766
Alignment:
Q  457 ggtaaactagctttaagtttaagaaacttcttacacttatgaaattctatgataataggtttgtaa 522  Q
    ||||||||| ||| ||| ||||||||||| | ||||||| ||||||||| |||| || ||||||||    
T  29966831 ggtaaactaacttaaagcttaagaaacttatgacacttaagaaattctaagatactaagtttgtaa 29966766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 2e-30; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 228 - 372
Target Start/End: Original strand, 13494786 - 13494930
Alignment:
Q  228 cagagagtaagggaagagagacaacacaaacaaattattctgtttcaccctacaatctgaggttagtccaatctccttgcaattctaaaagatttttcac 327  Q
    ||||||||||| || |||||||||||||||||||||||  || ||||||||| ||||||| ||||||| | || ||||||| ||| ||| |||||||| |    
T  13494786 cagagagtaagagatgagagacaacacaaacaaattatcatggttcaccctagaatctgaagttagtcaattccccttgcacttccaaatgatttttcgc 13494885  T
Q  328 tgtaatcttacaagattataattgctccaacacacaagtcagaga 372  Q
    | |||||  ||||||||| |||||||| |||||||||||||||||    
T  13494886 tataatcaaacaagattacaattgctcgaacacacaagtcagaga 13494930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 457 - 566
Target Start/End: Complemental strand, 19121784 - 19121675
Alignment:
Q  457 ggtaaactagctttaagtttaagaaacttcttacacttatgaaattctatgataataggtttgtaaaaaatttctaagtgcttctgcgcttttgaatttg 556  Q
    |||||| || |||||||||| |||||||||| ||||||| ||||||||| |||| || |||||||| || |||||||||| || ||||||||||||||||    
T  19121784 ggtaaaataactttaagttttagaaacttctaacacttaagaaattctaagatactaagtttgtaagaattttctaagtgtttgtgcgcttttgaatttg 19121685  T
Q  557 atagagtttt 566  Q
    | | ||||||    
T  19121684 acaaagtttt 19121675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 799
Target Start/End: Original strand, 47891417 - 47891458
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    |||||||||| ||||||||||||||| |||||||||||||||    
T  47891417 acttaaaggatcaatttgttacaaatttcaaacttaaaggac 47891458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 758 - 798
Target Start/End: Complemental strand, 25848327 - 25848287
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaagga 798  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  25848327 acttaaaggatcaatttattacaaatctcaaacttaaagga 25848287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 760 - 804
Target Start/End: Complemental strand, 39253829 - 39253785
Alignment:
Q  760 ttaaaggaccaatttgttacaaatctcaaacttaaaggacttatt 804  Q
    |||||||||||||||||||||||  |||||||||||| |||||||    
T  39253829 ttaaaggaccaatttgttacaaacttcaaacttaaagaacttatt 39253785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 2120806 - 2120756
Alignment:
Q  545 cttttgaatttgatagagttttagcacttgtaaaatatgtgtagtctctta 595  Q
    ||||||||||||| ||||||||  |||||||||| |||||| |||||||||    
T  2120806 cttttgaatttgacagagttttgacacttgtaaattatgtgaagtctctta 2120756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 25848535 - 25848580
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||| ||||||||| || ||| |||||||||||||    
T  25848535 acttaaaggaccaatgtgttacaaacctaaaatttaaaggacttat 25848580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 28813937 - 28813892
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||| || |||||| ||||||||||||||||||||| ||||||    
T  28813937 acttaaatgatcaatttattacaaatctcaaacttaaagaacttat 28813892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 762 - 803
Target Start/End: Original strand, 30954987 - 30955028
Alignment:
Q  762 aaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||| | ||||||||||||||| ||||||||||||    
T  30954987 aaaggaccaatctcttacaaatctcaaacataaaggacttat 30955028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 762 - 803
Target Start/End: Original strand, 30970799 - 30970840
Alignment:
Q  762 aaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||| | ||||||||||||||| ||||||||||||    
T  30970799 aaaggaccaatctcttacaaatctcaaacataaaggacttat 30970840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 40286338 - 40286293
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||||| |||| ||||| ||| ||||||||||||||||||||    
T  40286338 acttaaaggaacaatatgttataaacctcaaacttaaaggacttat 40286293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 766 - 803
Target Start/End: Original strand, 40286492 - 40286529
Alignment:
Q  766 gaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  40286492 gaccaatctgttacaaacctcaaacttaaaggacttat 40286529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 799
Target Start/End: Complemental strand, 47069568 - 47069527
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||||||||||| ||||||||| |||||| |||||||||    
T  47069568 acttaaaggaccaatatgttacaaacctcaaatttaaaggac 47069527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 762 - 803
Target Start/End: Complemental strand, 47069624 - 47069583
Alignment:
Q  762 aaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||| |||||||||||||||| ||||||||||||| ||||||    
T  47069624 aaagaaccaatttgttacaaaactcaaacttaaagaacttat 47069583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 799
Target Start/End: Original strand, 47069766 - 47069807
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||    
T  47069766 acttaaatgaccaatctgttacaaacctcaaacttaaaggac 47069807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 47891357 - 47891402
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||| |||| |||| |||||||| |||||||||||    
T  47891357 acttaaaggaccaatatgttgcaaacctcaaactcaaaggacttat 47891402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 3e-26; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 240 - 613
Target Start/End: Complemental strand, 25955206 - 25954836
Alignment:
Q  240 gaagagagacaacacaaacaaattattctgtttcaccct----acaatctgaggttagtccaatctccttgcaattctaaaagatttttcactgtaatct 335  Q
    |||||||||||||||||||||||||| ||| |||||||     ||||||||| |||||| ||||||||||||| || | ||||| |||||||| |||||     
T  25955206 gaagagagacaacacaaacaaattatcctggttcaccccggccacaatctgatgttagttcaatctccttgcattt-tcaaagaattttcactataatcg 25955108  T
Q  336 tacaagattataattgctccaacacacaagtcagagacttatttgcctcggacatggaggatttttacaatcaaggtttaacaataagttgtatgtgctt 435  Q
     ||||||||| ||||  |   |||||||||||  ||| ||  ||||||   ||| | |||| || ||||||||  ||||| ||| || ||| ||||| ||    
T  25955107 cacaagattacaattatttagacacacaagtctaagatttcattgccttacacaag-aggacttctacaatcagagttta-caa-aatttgaatgtgttt 25955011  T
Q  436 acactttatgactcaaagaaaggtaaactagctttaagtttaagaaacttcttacacttatgaaattctatgataataggtttgtaaaaaatttctaagt 535  Q
    | |||||   |||||||||  | ||||||| |||||| || ||| ||||||| ||||| | ||||||||| ||||  | |||||||| || |||||||||    
T  25955010 aaacttttgtactcaaagagtgataaactaactttaatttcaagtaacttctaacactaa-gaaattctaagatataaagtttgtaagaattttctaagt 25954912  T
Q  536 gcttctgcgcttttgaatttgatagagttttagcacttgtaaaatatgtgtagtctcttataatttcttcaaatttct 613  Q
    | || ||| ||||| ||||||| ||||||||  ||||||||||||||||| ||||||  |||| ||||||||| ||||    
T  25954911 gtttgtgcacttttaaatttgacagagttttgacacttgtaaaatatgtgaagtctc--ataagttcttcaaacttct 25954836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 457 - 582
Target Start/End: Complemental strand, 16687849 - 16687724
Alignment:
Q  457 ggtaaactagctttaagtttaagaaacttcttacacttatgaaattctatgataataggtttgtaaaaaatttctaagtgcttctgcgcttttgaatttg 556  Q
    |||||||||| |||||||| || |||||| | ||| ||  ||||||||| |||| || |||||||| || ||| |||||| |  || | |||||||||||    
T  16687849 ggtaaactagatttaagttcaaaaaacttttgacaattcagaaattctaagatactaagtttgtaagaattttttaagtgttcgtgtgtttttgaatttg 16687750  T
Q  557 atagagttttagcacttgtaaaatat 582  Q
    | ||||||||  ||||||||||||||    
T  16687749 acagagttttgacacttgtaaaatat 16687724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 17400644 - 17400599
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||    
T  17400644 acttaaaggaccaatttgttacaaatttcaaacttaaaagacttat 17400599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 17400844 - 17400889
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  17400844 acttaaatgaccaatatgttacaaatctcaaacttaaaggacttat 17400889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 25456375 - 25456330
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||    
T  25456375 acttaaaggaccaatctgttacaaacctcaaacttaaaggacttat 25456330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 16327198 - 16327153
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  16327198 acttaaacgaccaatctgttacaaacctcaaacttaaaggacttat 16327153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 16327336 - 16327381
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||||| |||| ||||||||| ||||||||||||||||||||    
T  16327336 acttaaaggatcaatctgttacaaacctcaaacttaaaggacttat 16327381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 17400784 - 17400829
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  17400784 acttacaggaccaatctgttacaaaactcaaacttaaaggacttat 17400829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 20928053 - 20928098
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  20928053 acttaaatgaccaatttgttagaaaactcaaacttaaaggacttat 20928098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 762 - 803
Target Start/End: Original strand, 23662120 - 23662161
Alignment:
Q  762 aaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||| |||||||||||||||||||||||||||||| ||||||    
T  23662120 aaagaaccaatttgttacaaatctcaaacttaaagaacttat 23662161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 758 - 797
Target Start/End: Original strand, 23662176 - 23662215
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaagg 797  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  23662176 acttaaaggaccaatttattacaaacctcaaacttaaagg 23662215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 758 - 797
Target Start/End: Complemental strand, 23796412 - 23796373
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaagg 797  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  23796412 acttaaaggaccaatttattacaaacctcaaacttaaagg 23796373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 795
Target Start/End: Original strand, 10827403 - 10827440
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaa 795  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  10827403 acttaaaggaccaatttattacaaacctcaaacttaaa 10827440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 12713124 - 12713169
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||| || |||| ||||| ||||||||||||||||||||||||    
T  12713124 acttaaaagatcaatatgttagaaatctcaaacttaaaggacttat 12713169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 12774388 - 12774433
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||| || |||| ||||| ||||||||||||||||||||||||    
T  12774388 acttaaaagatcaatatgttagaaatctcaaacttaaaggacttat 12774433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 799
Target Start/End: Original strand, 19550364 - 19550405
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    |||||||||| |||| ||||||||| ||||||||||||||||    
T  19550364 acttaaaggaacaatctgttacaaacctcaaacttaaaggac 19550405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 20927945 - 20927900
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||| ||||||||| ||||||| |||||| |||||||||||||    
T  20927945 acttaaatgaccaatttattacaaacctcaaatttaaaggacttat 20927900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 799
Target Start/End: Complemental strand, 28559275 - 28559234
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||||||||||| |||||||||  |||||||||||||||    
T  28559275 acttaaaggaccaatctgttacaaacgtcaaacttaaaggac 28559234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 760 - 801
Target Start/End: Original strand, 28559475 - 28559516
Alignment:
Q  760 ttaaaggaccaatttgttacaaatctcaaacttaaaggactt 801  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||    
T  28559475 ttaaaggaccaatctgttataaacctcaaacttaaaggactt 28559516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 799
Target Start/End: Complemental strand, 35461476 - 35461435
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||||||||||| | ||||||| ||||||||||||||||    
T  35461476 acttaaaggaccaatatattacaaacctcaaacttaaaggac 35461435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 799
Target Start/End: Original strand, 35461733 - 35461774
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||||||||||| | ||||||| ||||||||||||||||    
T  35461733 acttaaaggaccaatctattacaaacctcaaacttaaaggac 35461774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 317 - 610
Target Start/End: Original strand, 17743151 - 17743442
Alignment:
Q  317 agatttttcactgtaatcttacaagattataattgctccaacacacaagtcagagacttatttgcctcggacatggaggatttttacaatcaaggtttaa 416  Q
    |||||||||||| |||||  ||||||||| ||||||| |||  || |||| ||||||||||||| |||  ||| | |||| |||||||||||  |||||     
T  17743151 agatttttcactataatcacacaagattacaattgcttcaatgcataagttagagacttatttggctcacacaag-aggacttttacaatcagagtttat 17743249  T
Q  417 caat--aagttgtatgtgcttacactttatgactcaaagaaaggtaaactagctttaagttt-aagaaacttcttacacttatgaaattctatgataata 513  Q
     ||   || ||| |||||| |||||||| | |||||||||  |||||||||   ||||| || ||||||||| | ||||| | |||||| ||  |||  |    
T  17743250 taaatgaatttgaatgtgcatacactttgt-actcaaagagtggtaaactaaacttaaggttcaagaaacttttaacactaa-gaaattataaaatatga 17743347  T
Q  514 ggtttgtaaaaaatttctaagtgcttctgcgcttttgaatttgatagagttttagcacttgtaaaatatgtgtagtctcttataatttcttcaaatt 610  Q
      ||||||| || |||||||||| || ||||||||||||||||||||||||||  |||||||||||| ||||||||||||  |||||||||||||||    
T  17743348 attttgtaagaattttctaagtgtttgtgcgcttttgaatttgatagagttttgacacttgtaaaatttgtgtagtctct--taatttcttcaaatt 17743442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 424 - 582
Target Start/End: Complemental strand, 16404797 - 16404639
Alignment:
Q  424 ttgtatgtgcttacactttatgactcaaagaaaggtaaactagctttaagtttaagaaacttcttacacttatgaaattctatgataataggtttgtaaa 523  Q
    ||||||||| ||||||||||  ||||| | |  ||||||||  ||||||||| ||||||||| | ||||||| |||||| || |||| || ||||| ||     
T  16404797 ttgtatgtgtttacactttagaactcagatattggtaaactgactttaagttcaagaaacttatgacacttaagaaattttaagatactaagtttgcaat 16404698  T
Q  524 aaatttctaagtgcttctgcgcttttgaatttgatagagttttagcacttgtaaaatat 582  Q
    || |||||||||| || ||||||||||| || || ||||||||  ||||||||||||||    
T  16404697 aattttctaagtgtttatgcgcttttgagttggacagagttttgacacttgtaaaatat 16404639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 758 - 804
Target Start/End: Original strand, 45038413 - 45038459
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttatt 804  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  45038413 acttaaaggaccaatctgttacaaacctcaaacttaaaggacttatt 45038459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 7246092 - 7246047
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||    
T  7246092 acttaaacgaccaatttgttacaaatatcaaacttaaaggacttat 7246047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 759 - 804
Target Start/End: Complemental strand, 46196209 - 46196164
Alignment:
Q  759 cttaaaggaccaatttgttacaaatctcaaacttaaaggacttatt 804  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||    
T  46196209 cttaaaggaccaatttgttacaaacgtcaaacttaaaggacttatt 46196164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 759 - 803
Target Start/End: Complemental strand, 45038345 - 45038301
Alignment:
Q  759 cttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  45038345 cttaaaggaccaatctgttataaatctcaaacttaaaggacttat 45038301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 589
Target Start/End: Original strand, 6115895 - 6115957
Alignment:
Q  527 tttctaagtgcttctgcgcttttgaatttgatagagttttagcacttgtaaaatatgtgtagt 589  Q
    |||||||||| || ||||||||||||||||| ||||||||  | |||||||||||||| ||||    
T  6115895 tttctaagtgtttgtgcgcttttgaatttgacagagttttgacgcttgtaaaatatgtatagt 6115957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 41083154 - 41083109
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||| |||||||||  |||||||||||||||||||    
T  41083154 acttaaaggaccaatatgttacaaacttcaaacttaaaggacttat 41083109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 799
Target Start/End: Original strand, 41083351 - 41083392
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  41083351 acttaaaggaccaatctgttacaaacctcaaacttaaaggac 41083392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 44057300 - 44057345
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||| ||||||||| |||||||||||||||||||| |||||||    
T  44057300 acttaaatgaccaatttattacaaatctcaaacttaaatgacttat 44057345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 53863417 - 53863372
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||| ||||||||||||| |||||||| |||||||    
T  53863417 acttaaaggaccaatctgttacaaatctcgaacttaaatgacttat 53863372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 763 - 803
Target Start/End: Complemental strand, 11884711 - 11884671
Alignment:
Q  763 aaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||||| ||||||||| ||||||||||||||||||||    
T  11884711 aaggaccaatctgttacaaacctcaaacttaaaggacttat 11884671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 758 - 798
Target Start/End: Complemental strand, 26782393 - 26782353
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaagga 798  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  26782393 acttaaaggaccaatctgttacaaatatcaaacttaaagga 26782353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 756 - 803
Target Start/End: Complemental strand, 7246154 - 7246107
Alignment:
Q  756 ttacttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||||||| |||| |||||||||| | |||||||||||||||||    
T  7246154 ttacttaaaggatcaatctgttacaaatataaaacttaaaggacttat 7246107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 591
Target Start/End: Complemental strand, 16301324 - 16301230
Alignment:
Q  497 gaaattctatgataataggtttgtaaaaaatttctaagtgcttctgcgcttttgaattt-gatagagttttagcacttgtaaaatatgtgtagtct 591  Q
    ||||||||| ||||||| |||||||| || ||||||| || || ||||||||||||||| ||  || ||||| |||||||||||||| ||| ||||    
T  16301324 gaaattctaagataataagtttgtaagaattttctaa-tgtttgtgcgcttttgaattttgactgacttttaacacttgtaaaatatatgttgtct 16301230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 760 - 803
Target Start/End: Original strand, 21322009 - 21322052
Alignment:
Q  760 ttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||| | ||||||| ||||||||||||||||||||    
T  21322009 ttaaaggaccaatcttttacaaacctcaaacttaaaggacttat 21322052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 375
Target Start/End: Complemental strand, 21546373 - 21546322
Alignment:
Q  324 tcactgtaatcttacaagattataattgctccaacacacaagtcagagactt 375  Q
    ||||| |||||  ||||||||||||||| ||||||||||||||||| |||||    
T  21546373 tcactataatcacacaagattataattgttccaacacacaagtcagtgactt 21546322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 760 - 802
Target Start/End: Complemental strand, 2469997 - 2469955
Alignment:
Q  760 ttaaaggaccaatttgttacaaatctcaaacttaaaggactta 802  Q
    ||||||||||||| | ||||||| |||||||||||||||||||    
T  2469997 ttaaaggaccaatatattacaaagctcaaacttaaaggactta 2469955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 270 - 364
Target Start/End: Original strand, 6115654 - 6115748
Alignment:
Q  270 tttcaccctacaatctgaggttagtccaatctccttgcaattctaaaagatttttcactgtaatcttacaagattataattgctccaacacacaa 364  Q
    |||||||| |||||| |||||||||||| || | ||||| ||| |||  |||||||| | |||||  ||||||||| || ||||| |||||||||    
T  6115654 tttcaccccacaatccgaggttagtccagtcacattgcatttccaaagaatttttcagtataatcacacaagattaaaactgctcaaacacacaa 6115748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 821 - 867
Target Start/End: Complemental strand, 16404420 - 16404374
Alignment:
Q  821 ttatttgtttgtttatgcacgtggtcagaagaaaacaaacaatacta 867  Q
    ||||||||||||||  ||||||||||||||||| ||||||| |||||    
T  16404420 ttatttgtttgtttcagcacgtggtcagaagaagacaaacagtacta 16404374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 758 - 800
Target Start/End: Original strand, 25056193 - 25056235
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggact 800  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||    
T  25056193 acttaaaagaccaatttgttacaaacctcaaacttaaaagact 25056235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 761 - 799
Target Start/End: Complemental strand, 40395136 - 40395098
Alignment:
Q  761 taaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  40395136 taaaggaccaatctgtaacaaatctcaaacttaaaggac 40395098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 53863555 - 53863601
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaactt-aaaggacttat 803  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||||    
T  53863555 acttaaaggaccaatttgttacaaccctcaaacttaaaaggacttat 53863601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 2470145 - 2470190
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||| | ||||||| |||||| |||||||||||||    
T  2470145 acttaaaggaccaatatattacaaacctcaaatttaaaggacttat 2470190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 774 - 803
Target Start/End: Original strand, 12498873 - 12498902
Alignment:
Q  774 tgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||||||||||||||||||    
T  12498873 tgttacaaatctcaaacttaaaggacttat 12498902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 799
Target Start/End: Original strand, 14984068 - 14984109
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||||||||||| |||||||||  |||||||||||||||    
T  14984068 acttaaaggaccaatatgttacaaacatcaaacttaaaggac 14984109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 556
Target Start/End: Original strand, 23692323 - 23692412
Alignment:
Q  467 ctttaagtttaagaaacttcttacacttatgaaattctatgataataggtttgtaaaaaatttctaagtgcttctgcgcttttgaatttg 556  Q
    |||||| || ||||||||||| ||||||| ||||| ||| |||| || |||||| | || |||||| ||| || || |||||||||||||    
T  23692323 ctttaaattcaagaaacttctgacacttaagaaatactaagatactaagtttgtgagaattttctaggtgtttgtgtgcttttgaatttg 23692412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 39938137 - 39938202
Alignment:
Q  319 atttttcactgtaatcttacaagattataattgctccaacacacaagtcagagacttatttgcctc 384  Q
    |||||||||| ||| |  |||| |||| |||||||||| ||||||||||| |||||||||| ||||    
T  39938137 atttttcactataaccacacaaaattacaattgctccagcacacaagtcacagacttatttacctc 39938202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 40147199 - 40147244
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||||  |||||||||||||| ||||||||||||| ||||||    
T  40147199 acttaaagggtcaatttgttacaaacctcaaacttaaagaacttat 40147244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 40395199 - 40395154
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||| || ||| ||||||||| ||||||||||||||||||||    
T  40395199 acttaaagaactaatatgttacaaacctcaaacttaaaggacttat 40395154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 46196355 - 46196400
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||| || ||||| ||||||||| ||||||||||||||||||||    
T  46196355 acttaatggtccaatctgttacaaacctcaaacttaaaggacttat 46196400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 11814968 - 11814897
Alignment:
Q  18 attttatatctatataataaacatttggcttgcaaaagttacaaacatactacacatttgtattttccaacgt 90  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||  | |||||||||||||    
T  11814968 attttatatc-atataataaacatttggcttgcaaaagttacaaagatactacacaagtttattttccaacgt 11814897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 459 - 610
Target Start/End: Original strand, 34487886 - 34488035
Alignment:
Q  459 taaactagctttaagtttaagaaacttcttacacttatgaaattctatgataataggtttgtaaaaaatttctaagtgcttctgcgcttttgaatttgat 558  Q
    ||||||| ||||||||| ||||| |||   ||||||| ||||||||| |||  |   ||||||| || |||||||||| || | |||||||||||||||     
T  34487886 taaactaactttaagttcaagaagctttcgacacttaagaaattctaagatgctcaatttgtaagaattttctaagtgtttgtacgcttttgaatttgac 34487985  T
Q  559 agagttttagcacttgtaaaatatgtgtagtctcttataatttcttcaaatt 610  Q
    ||||||||  ||||| |||||| | || |||||||  |||||||||||||||    
T  34487986 agagttttgacacttttaaaatctatgcagtctct--taatttcttcaaatt 34488035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 244 - 375
Target Start/End: Original strand, 34487682 - 34487813
Alignment:
Q  244 agagacaacacaaacaaattattctgtttcaccctacaatctgaggttagtccaatctccttgcaattctaaaagatttttcactgtaatcttacaagat 343  Q
    ||||||||||||| |||||||| ||  || | || | | || |||||||||||| |||||||||| |||  |  || |||||||| |||||  |||||||    
T  34487682 agagacaacacaagcaaattatcctagtttatcccatattccgaggttagtccagtctccttgcacttcccatggaattttcactataatcacacaagat 34487781  T
Q  344 tataattgctccaacacacaagtcagagactt 375  Q
    || |||| ||||||||||||||| ||||||||    
T  34487782 tacaatttctccaacacacaagttagagactt 34487813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 826 - 876
Target Start/End: Complemental strand, 17048255 - 17048205
Alignment:
Q  826 tgtttgtttatgcacgtggtcagaagaaaacaaacaatactatcacaggtt 876  Q
    ||||||||| | ||||||||||||| || |||||||||||||||| |||||    
T  17048255 tgtttgtttctacacgtggtcagaaaaagacaaacaatactatcagaggtt 17048205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 758 - 800
Target Start/End: Complemental strand, 34173358 - 34173316
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggact 800  Q
    ||||||||||||||| |||||||||  ||||||||||||||||    
T  34173358 acttaaaggaccaatctgttacaaacatcaaacttaaaggact 34173316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 52913240 - 52913194
Alignment:
Q  758 acttaaaggaccaatttgtt-acaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  52913240 acttaaaggaccaatctgtttacaaacctcaaacttaaaggacttat 52913194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 2633560 - 2633605
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||| ||||||| ||| ||||| ||||||||||||||||||||    
T  2633560 acttaaatgaccaatctgtcacaaacctcaaacttaaaggacttat 2633605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 762 - 803
Target Start/End: Complemental strand, 18608624 - 18608583
Alignment:
Q  762 aaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||| ||| ||||||||| ||||||||||||||||||||    
T  18608624 aaaggacaaatctgttacaaacctcaaacttaaaggacttat 18608583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 18608678 - 18608633
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||| | |||| ||||||||| ||||||||||||||||||||    
T  18608678 acttaaagaatcaatctgttacaaacctcaaacttaaaggacttat 18608633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 799
Target Start/End: Original strand, 26879698 - 26879739
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||    
T  26879698 acttaaatgaccaatctgttacaaacctcaaacttaaaggac 26879739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 799
Target Start/End: Complemental strand, 33650438 - 33650397
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||    
T  33650438 acttaaaggaccaatctgttataaacctcaaacttaaaggac 33650397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 758 - 799
Target Start/End: Original strand, 24909701 - 24909742
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24909701 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 24909742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 350
Target Start/End: Original strand, 3318525 - 3318636
Alignment:
Q  238 gggaagagagacaacacaaacaaattattctgtttcaccctacaatctgaggttagtccaatctccttgcaattctaaaagatttttcactgtaatctta 337  Q
    ||||||||||||||||||||| |||||| ||| |||| || |||||||||| |||||||| |||| ||||| ||| ||  |||||| |||  |||||  |    
T  3318525 gggaagagagacaacacaaac-aattatgctggttcatcccacaatctgagattagtccagtctctttgcacttccaagggattttccacaataatcaca 3318623  T
Q  338 caagattataatt 350  Q
    |||||||| ||||    
T  3318624 caagattacaatt 3318636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 285 - 384
Target Start/End: Original strand, 12842638 - 12842737
Alignment:
Q  285 tgaggttagtccaatctccttgcaattctaaaagatttttcactgtaatcttacaagattataattgctccaacacacaagtcagagacttatttgcctc 384  Q
    ||||||||||||| || |||| || ||| |||| |||||| ||| |||||  ||||||||| ||||| || |||||||||||  ||||||| ||||||||    
T  12842638 tgaggttagtccagtccccttacacttccaaaatattttttactataatcacacaagattacaattgatcaaacacacaagtttgagacttctttgcctc 12842737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 544 - 595
Target Start/End: Original strand, 12842893 - 12842944
Alignment:
Q  544 gcttttgaatttgatagagttttagcacttgtaaaatatgtgtagtctctta 595  Q
    |||| ||||||||| ||||||||  |||||||||||||||||||||||||||    
T  12842893 gcttctgaatttgacagagttttgtcacttgtaaaatatgtgtagtctctta 12842944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 799
Target Start/End: Complemental strand, 6220223 - 6220182
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    |||||||||||||||||||| |||| ||||||||||||||||    
T  6220223 acttaaaggaccaatttgtttcaaacctcaaacttaaaggac 6220182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 6220420 - 6220465
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||| |||||| ||||||||||||||||||||||| ||||||    
T  6220420 acttaaagtaccaatctgttacaaatctcaaacttaaagaacttat 6220465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 799
Target Start/End: Original strand, 6220480 - 6220521
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    |||||||| |||||||||||||||| ||||||||||||||||    
T  6220480 acttaaagaaccaatttgttacaaacctcaaacttaaaggac 6220521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 27052631 - 27052676
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  27052631 acttaaaggaccaatctgttataaacctcaaacttaaaggacttat 27052676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 799
Target Start/End: Complemental strand, 41151445 - 41151404
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  41151445 acttaaaggaccaatatgttacaaaactcaaacttaaaggac 41151404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 41151505 - 41151460
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||    
T  41151505 acttaaaggaccaatctgttactaaactcaaacttaaaggacttat 41151460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 803
Target Start/End: Complemental strand, 27052567 - 27052523
Alignment:
Q  759 cttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||    
T  27052567 cttaaagaaccaatctattacaaatctcaaacttaaaggacttat 27052523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 756 - 803
Target Start/End: Complemental strand, 6220285 - 6220238
Alignment:
Q  756 ttacttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||| |||||||  |||||||| ||||||||||||||||||||    
T  6220285 ttacttaaatgaccaatcagttacaaacctcaaacttaaaggacttat 6220238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 760 - 803
Target Start/End: Original strand, 24909643 - 24909686
Alignment:
Q  760 ttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||| || |||||| ||||||||||||||||||||    
T  24909643 ttaaaggaccaatctgctacaaacctcaaacttaaaggacttat 24909686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 240 - 350
Target Start/End: Complemental strand, 33929360 - 33929251
Alignment:
Q  240 gaagagagacaacacaaacaaattattctgtttcaccctacaatctgaggttagtccaatctccttgcaattctaaaagatttttcactgtaatcttaca 339  Q
    ||||||| ||||||||| ||| |||| ||  ||||| | | |||| |||||||||||| ||  |||||| ||| ||| ||||||||||| |||||  |||    
T  33929360 gaagagaaacaacacaagcaa-ttatcctagttcactcaataatccgaggttagtccagtcctcttgcacttccaaatgatttttcactataatcacaca 33929262  T
Q  340 agattataatt 350  Q
    |||||||||||    
T  33929261 agattataatt 33929251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 457 - 579
Target Start/End: Complemental strand, 35104452 - 35104331
Alignment:
Q  457 ggtaaactagctttaagtttaagaaacttcttacacttatgaaattctatgataataggtttgtaaaaaatttctaagtgcttctgcgcttttgaatttg 556  Q
    ||||| ||| ||||||| | ||| ||||||| ||||| |  |||||||| |||| || |||||||| || |||||||||| ||  | |||||| ||||||    
T  35104452 ggtaacctaactttaagctcaagtaacttctaacactgaa-aaattctaagatactaagtttgtaagaattttctaagtgtttgagtgcttttaaatttg 35104354  T
Q  557 atagagttttagcacttgtaaaa 579  Q
    | ||||||||  |||||||||||    
T  35104353 acagagttttgacacttgtaaaa 35104331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 799
Target Start/End: Complemental strand, 9399856 - 9399815
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    |||||||| |||||| ||||||||| ||||||||||||||||    
T  9399856 acttaaagaaccaatatgttacaaacctcaaacttaaaggac 9399815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 375
Target Start/End: Original strand, 20704126 - 20704231
Alignment:
Q  271 ttcaccctacaatctgaggttagtccaatctccttgcaatt-ctaaaagatttttcactgtaatcttacaagattataattgctccaacacacaagtcag 369  Q
    ||||||| |||||  |||||||||||| || ||||||| || |||| ||||||| ||||  ||||  ||||||||| || ||||| |||||||||||  |    
T  20704126 ttcaccccacaattcgaggttagtccagtccccttgcactttctaatagattttccactacaatcacacaagattacaactgctcaaacacacaagtttg 20704225  T
Q  370 agactt 375  Q
    ||||||    
T  20704226 agactt 20704231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 799
Target Start/End: Complemental strand, 24827397 - 24827356
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||    
T  24827397 acttaaatgaccaatctgttacaaacctcaaacttaaaggac 24827356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 27052508 - 27052463
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||| ||||||||| || ||||||||| |||||||    
T  27052508 acttaaaggaccaatgtgttacaaaccttaaacttaaatgacttat 27052463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 760 - 803
Target Start/End: Complemental strand, 161502 - 161459
Alignment:
Q  760 ttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  161502 ttaaaggaccaatctgttacaaatctcaaacttaaaggacttat 161459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 760 - 799
Target Start/End: Complemental strand, 161442 - 161403
Alignment:
Q  760 ttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  161442 ttaaaggaccaatctgttacaaacctcaaacttaaaggac 161403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 761 - 803
Target Start/End: Original strand, 161645 - 161687
Alignment:
Q  761 taaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||||||| |||||||||| ||||| |||||||||||||    
T  161645 taaaggaccaatctgttacaaatatcaaatttaaaggacttat 161687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 228 - 326
Target Start/End: Original strand, 14760382 - 14760480
Alignment:
Q  228 cagagagtaagggaagagagacaacacaaacaaattattctgtttcaccctacaatctgaggttagtccaatctccttgcaattctaaaagatttttca 326  Q
    ||||||||||  |||||| ||||||||||||||||||| ||  ||||||  ||||||| |||||||| ||||| ||||||| ||| || ||| ||||||    
T  14760382 cagagagtaaaagaagagtgacaacacaaacaaattatcctagttcacctcacaatctaaggttagttcaatccccttgcacttccaagagacttttca 14760480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 10356499 - 10356544
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  10356499 acttaaaagaccaatctgttacaaatctcaaacttaaaggacttat 10356544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 21598545 - 21598500
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||    
T  21598545 acttaaaggaccaatctgttacaaacctcaaacttaaaggacttat 21598500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 758 - 799
Target Start/End: Complemental strand, 35225438 - 35225397
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  35225438 acttaaaggaccaatttgttacaaacctcaaacttaaaggac 35225397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 759 - 803
Target Start/End: Original strand, 35050704 - 35050748
Alignment:
Q  759 cttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||    
T  35050704 cttaaaggaccaatctgttacaaatctcaaacttaaagaacttat 35050748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 10356361 - 10356316
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||| |||||| |||||||||| |||||||||||||||||||    
T  10356361 acttaaagaaccaatctgttacaaatatcaaacttaaaggacttat 10356316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 21598683 - 21598728
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||||    
T  21598683 acttaaaggaccaatatgttacaaaccacaaacttaaaggacttat 21598728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 799
Target Start/End: Original strand, 21598743 - 21598784
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  21598743 acttaaaggaccaatctgttacaaacctcaaacttaaaggac 21598784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 467 - 595
Target Start/End: Original strand, 14760615 - 14760743
Alignment:
Q  467 ctttaagtttaagaaacttcttacacttatgaaattctatgataataggtttgtaaaaaatttctaagtgcttctgcgcttttgaatttgatagagtttt 566  Q
    ||||||| ||||||||||||  ||||||| |||||| || ||||||| |||||||| || ||||  |||| ||  | |||||| ||||||| ||| | ||    
T  14760615 ctttaagcttaagaaacttcagacacttaagaaattttaagataataagtttgtaagaattttcatagtgtttgagtgcttttaaatttgacagaatgtt 14760714  T
Q  567 agcacttgtaaaatatgtgtagtctctta 595  Q
     |||| |||| | ||| ||||||||||||    
T  14760715 ggcacatgtatattatttgtagtctctta 14760743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 760 - 799
Target Start/End: Complemental strand, 10356299 - 10356260
Alignment:
Q  760 ttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  10356299 ttaaaggactaatttgttacaaacctcaaacttaaaggac 10356260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 758 - 801
Target Start/End: Original strand, 12341258 - 12341301
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggactt 801  Q
    |||||||||||| ||||||||||||  |||||||||||||||||    
T  12341258 acttaaaggacctatttgttacaaacgtcaaacttaaaggactt 12341301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 823 - 870
Target Start/End: Complemental strand, 22562783 - 22562736
Alignment:
Q  823 atttgtttgtttatgcacgtggtcagaagaaaacaaacaatactatca 870  Q
    |||||||||||| | |||||||||||||||||||||||  ||||||||    
T  22562783 atttgtttgtttctacacgtggtcagaagaaaacaaactgtactatca 22562736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 824 - 866
Target Start/End: Original strand, 33546284 - 33546326
Alignment:
Q  824 tttgtttgtttatgcacgtggtcagaagaaaacaaacaatact 866  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||    
T  33546284 tttgtttgtttctgcacatggtcagaagaagacaaacaatact 33546326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 762 - 803
Target Start/End: Complemental strand, 9982766 - 9982725
Alignment:
Q  762 aaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||| |||| ||||||||| ||||||||||||||||||||    
T  9982766 aaaggatcaatctgttacaaaactcaaacttaaaggacttat 9982725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 799
Target Start/End: Original strand, 9982967 - 9983008
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    |||||||||| |||||||||||||  ||||||||||||||||    
T  9982967 acttaaaggatcaatttgttacaatcctcaaacttaaaggac 9983008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 17342678 - 17342723
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||  ||||||||| |||||||||||| |||||||    
T  17342678 acttaaaggaccaacatgttacaaacctcaaacttaaaagacttat 17342723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 799
Target Start/End: Complemental strand, 21598485 - 21598444
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||    
T  21598485 acttaaaggaccaatctgttataaacctcaaacttaaaggac 21598444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 35050818 - 35050863
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||| |||||||||  | |||||||||||||||||    
T  35050818 acttaaaggaccaatctgttacaaactttaaacttaaaggacttat 35050863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 35225498 - 35225453
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||| ||||||||| || |||||||||||| ||||    
T  35225498 acttaaaggaccaatctgttacaaaccttaaacttaaaggatttat 35225453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 29710420 - 29710375
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||    
T  29710420 acttaaaggaccaatatgttacaaatatcaaacttaaaggacttat 29710375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 2167064 - 2167120
Alignment:
Q  242 agagagacaacacaaacaaattattctgtttcaccctacaatctgaggttagtccaa 298  Q
    ||||||||||||||| |||| ||| ||| ||||||||||||||||||||||| ||||    
T  2167064 agagagacaacacaatcaaactatcctgattcaccctacaatctgaggttagaccaa 2167120  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 760 - 803
Target Start/End: Original strand, 42313030 - 42313073
Alignment:
Q  760 ttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||||||||||||||||||| ||||| |||||||||||||    
T  42313030 ttaaaggaccaatttgttacaaatatcaaatttaaaggacttat 42313073  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 3198311 - 3198266
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  3198311 acttaaaagaccaatttgttacaaacctcaaacttaaagaacttat 3198266  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 821 - 858
Target Start/End: Complemental strand, 4514227 - 4514190
Alignment:
Q  821 ttatttgtttgtttatgcacgtggtcagaagaaaacaa 858  Q
    |||||||||||||||||||| |||||||||||||||||    
T  4514227 ttatttgtttgtttatgcacttggtcagaagaaaacaa 4514190  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 799
Target Start/End: Original strand, 6694767 - 6694808
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  6694767 acttaaaggaccaatatgttacaaacctcaaacttaaaggac 6694808  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 11975547 - 11975502
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||||| |||| ||||||||| ||||||||||||||||||||    
T  11975547 acttaaaggatcaatatgttacaaacctcaaacttaaaggacttat 11975502  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 11975678 - 11975723
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||    
T  11975678 acttaaaggaccaatcagttacaaacctcaaacttaaaggacttat 11975723  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 799
Target Start/End: Original strand, 11975738 - 11975779
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  11975738 acttaaaggaccaatctgtttcaaatctcaaacttaaaggac 11975779  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 29710557 - 29710602
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||||||||||||||  ||||||||||||||||||||| |||||||    
T  29710557 acttaaaggaccaatccgttacaaatctcaaacttaaatgacttat 29710602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 30869637 - 30869682
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  30869637 acttaaaggaccaatctgttacaaacctcaaacttaaagaacttat 30869682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 271 - 367
Target Start/End: Original strand, 24676975 - 24677071
Alignment:
Q  271 ttcaccctacaatctgaggttagtccaatctccttgcaattctaaaagatttttcactgtaatcttacaagattataattgctccaacacacaagtc 367  Q
    ||||||| |||| | |||| ||||||| ||||||| || |||||| |||||||||| | |||||  ||||||||| |||| ||  ||||||||||||    
T  24676975 ttcaccccacaaaccgaggctagtccagtctccttacacttctaagagatttttcagtataatcacacaagattacaattactttaacacacaagtc 24677071  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 827 - 870
Target Start/End: Complemental strand, 4123012 - 4122969
Alignment:
Q  827 gtttgtttatgcacgtggtcagaagaaaacaaacaatactatca 870  Q
    |||||||| | ||||||||||||||||||| |||||||||||||    
T  4123012 gtttgtttctacacgtggtcagaagaaaacgaacaatactatca 4122969  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 665 - 739
Target Start/End: Complemental strand, 5459632 - 5459557
Alignment:
Q  665 catcaaattcgtcgttaa-aagctttgattcatatttgaaaactttgccttaaatgaataatggtgttgaatagta 739  Q
    ||||||||||||| |||  ||||||||| |||  ||||||||||||||||  |||| |||||| ||||||||||||    
T  5459632 catcaaattcgtccttaggaagctttgaatcagttttgaaaactttgcctctaatggataatgatgttgaatagta 5459557  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 271 - 350
Target Start/End: Original strand, 31270614 - 31270693
Alignment:
Q  271 ttcaccctacaatctgaggttagtccaatctccttgcaattctaaaagatttttcactgtaatcttacaagattataatt 350  Q
    ||||||||||||||||||||||||| | |  ||||||| |||||| |||||||  ||| |||||  ||||||||| ||||    
T  31270614 ttcaccctacaatctgaggttagtctagttcccttgcacttctaagagattttctactataatcacacaagattacaatt 31270693  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 824 - 870
Target Start/End: Complemental strand, 5459495 - 5459449
Alignment:
Q  824 tttgtttgtttatgcacgtggtcagaagaaaacaaacaatactatca 870  Q
    ||||||||||| ||||||||||||||| || | ||||||||||||||    
T  5459495 tttgtttgtttttgcacgtggtcagaaaaagataaacaatactatca 5459449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 12223129 - 12223071
Alignment:
Q  317 agatttttcactgtaatcttacaagattataattgctccaacacacaagtcagagactt 375  Q
    |||||||||||| |||||  ||||||||| |||||||| ||||||||||  ||||||||    
T  12223129 agatttttcactataatcacacaagattacaattgctcaaacacacaagcaagagactt 12223071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 758 - 800
Target Start/End: Original strand, 27576628 - 27576670
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggact 800  Q
    ||||||||||||||| |||||||||  ||||||||||||||||    
T  27576628 acttaaaggaccaatctgttacaaacgtcaaacttaaaggact 27576670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 457 - 511
Target Start/End: Complemental strand, 39228126 - 39228072
Alignment:
Q  457 ggtaaactagctttaagtttaagaaacttcttacacttatgaaattctatgataa 511  Q
    ||||||||| ||| ||||||||||||||||| ||||||| |||||| || |||||    
T  39228126 ggtaaactaacttaaagtttaagaaacttctgacacttacgaaattataagataa 39228072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 761 - 803
Target Start/End: Complemental strand, 42312856 - 42312814
Alignment:
Q  761 taaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    |||| ||||||| | ||||||||||||||||||||||||||||    
T  42312856 taaatgaccaatctattacaaatctcaaacttaaaggacttat 42312814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 803
Target Start/End: Complemental strand, 4048302 - 4048257
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||| ||||||||| |||| |||||||| ||||||    
T  4048302 acttaaaggaccaatatgttacaaacctcagacttaaagaacttat 4048257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 799
Target Start/End: Complemental strand, 27280654 - 27280613
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggac 799  Q
    ||||||||||||||||||| |||||  |||||||||||||||    
T  27280654 acttaaaggaccaatttgtaacaaacttcaaacttaaaggac 27280613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 763 - 797
Target Start/End: Complemental strand, 12144 - 12110
Alignment:
Q  763 aaggaccaatttgttacaaatctcaaacttaaagg 797  Q
    |||||||||||||||||||||||||||||||||||    
T  12144 aaggaccaatttgttacaaatctcaaacttaaagg 12110  T

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Target: scaffold0194 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 824 - 867
Target Start/End: Complemental strand, 6768 - 6725
Alignment:
Q  824 tttgtttgtttatgcacgtggtcagaagaaaacaaacaatacta 867  Q
    ||||||||||||||||||||||||| |||| ||||||| |||||    
T  6768 tttgtttgtttatgcacgtggtcagtagaagacaaacactacta 6725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0669 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 825 - 859
Target Start/End: Original strand, 4775 - 4809
Alignment:
Q  825 ttgtttgtttatgcacgtggtcagaagaaaacaaa 859  Q
    ||||||||||||||||||||||||||||| |||||    
T  4775 ttgtttgtttatgcacgtggtcagaagaagacaaa 4809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 758 - 800
Target Start/End: Original strand, 1232 - 1274
Alignment:
Q  758 acttaaaggaccaatttgttacaaatctcaaacttaaaggact 800  Q
    ||||||||||||||| |||||||||  ||||||||||||||||    
T  1232 acttaaaggaccaatctgttacaaacgtcaaacttaaaggact 1274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 774 - 803
Target Start/End: Complemental strand, 21604 - 21575
Alignment:
Q  774 tgttacaaatctcaaacttaaaggacttat 803  Q
    ||||||||||||||||||||||||||||||    
T  21604 tgttacaaatctcaaacttaaaggacttat 21575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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