View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12480_low_2 (Length: 651)
Name: NF12480_low_2
Description: NF12480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12480_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 1 - 639
Target Start/End: Complemental strand, 52109284 - 52108649
Alignment:
| Q |
1 |
ttatgcttaattcattactcttttgaaacctcaaaatttctttaggaacactgttttcttcacacttgaagccaccttcttcattttcaccacactccat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
52109284 |
ttatgcttaattcattactcttttgaaacctcaaaatttctttaggaacactgttttcttcacacttgaagtcaccttcttcattttcatcacactccat |
52109185 |
T |
|
| Q |
101 |
atttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaatgttaatgtttctaagct |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52109184 |
atttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaatgttaatgtttccaagct |
52109085 |
T |
|
| Q |
201 |
aatttctcaccaattaaatccaaatccacttccaaatccccaaacaatttcaaacaattttagggttttactattcaatctctatggaacccaagattcc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52109084 |
aatttctcaccaattaaatccaaatccacttccaaatccccaaa---tttcaaacaattttagggttttactattcaatctctatggaacccaagattcc |
52108988 |
T |
|
| Q |
301 |
aaatttcccgaatacgagatgcctactgttacatggggtgtgattcaaggccgcaaagagaaactcgtttcgcgggtcatcatcttcgattatctcaagg |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52108987 |
aaatttccggaatacgagatgcctactgttacatggggtgtgattcaaggccgcaaagagaaactcgtttcgcgggtcatcatcttcgattatctcaagg |
52108888 |
T |
|
| Q |
401 |
gtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaac |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52108887 |
gtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaac |
52108788 |
T |
|
| Q |
501 |
gattgatgatataaatcagtatcctttgattttgggttgtagtgttagaaaaaacatgattcctgttttagggtatttagaaaaaattgggatttctagg |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52108787 |
gattgatgatataaatcagtatcctttgattttgggttgtagtgttagaaaaaacatgattcctgttttagggtatttagaaaaaattgggatttctagg |
52108688 |
T |
|
| Q |
601 |
tctaaacttggtgaatttattaagaattatccacaggtt |
639 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
52108687 |
tctaaacttggtgaatttattaagaattatccacaggtt |
52108649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 246 - 639
Target Start/End: Complemental strand, 44520314 - 44519922
Alignment:
| Q |
246 |
aatttcaaacaattttagggttttactattcaatctctatggaacccaagattccaaatttcccgaatacgagatgcctactgttacatggggtgtgatt |
345 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44520314 |
aatttcaaacaattttagggttttattcttcaatctctatggaacccaagattccaaatttcctgaatacgagatgcctactgttacatggggtgtgatt |
44520215 |
T |
|
| Q |
346 |
caaggccgcaaagagaaactcgtttcgcgggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttcctt |
445 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44520214 |
caaggtcgcaaagagaaactcgtttcgagggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttcctt |
44520115 |
T |
|
| Q |
446 |
caaccgttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgattgatgatataaatcagtatcctttgattttgggttgtagtgt |
545 |
Q |
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| T |
44520114 |
caaccgttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgattgatgatataaatcagtatcctttaattttgggttgtagtgt |
44520015 |
T |
|
| Q |
546 |
tagaaaaaacatgattcctgttttagggtatttagaaaaaattgggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
639 |
Q |
| |
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|||||||||||||||| | |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44520014 |
gagaaaaaacatgattcgtattttagggtatttataaaaaatt-ggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
44519922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 44526294 - 44526207
Alignment:
| Q |
96 |
tccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaat |
183 |
Q |
| |
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|||||| |||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||| |||| | |||||||||||| |
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| T |
44526294 |
tccataattctgcacccagtgcttcacttcctctatcaaatcaatgctcacaagaagaaaattcctcactatattctcatcacgcaat |
44526207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 44520388 - 44520337
Alignment:
| Q |
188 |
atgtttctaagctaatttctcaccaattaaatccaaatccacttccaaatcc |
239 |
Q |
| |
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||||||||||||||||||| ||||||||| |||||||| |||||||| |||| |
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| T |
44520388 |
atgtttctaagctaatttcacaccaattatatccaaatgcacttccacatcc |
44520337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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