View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12480_low_3 (Length: 600)
Name: NF12480_low_3
Description: NF12480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12480_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Original strand, 39124890 - 39125478
Alignment:
| Q |
1 |
tcaaactacactctgcttctagatgtcatgtaataggtaaatatatgatattgtttatcttttaagttatcnnnnnnnnnnnnnnnnnnntaaaataagg |
100 |
Q |
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| T |
39124890 |
tcaaactacactctgcttctagatgtcatgtaataggtaaatatatgatattgtttatcttttaagttatcttttttgtttttaaaaaaataaaataatg |
39124989 |
T |
|
| Q |
101 |
tcaagtggctattatgaatcagttgacaagaactgctatatatttttgaaattctgaagatgtaatatctgtctatagctggctgtgtaataagttggat |
200 |
Q |
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| T |
39124990 |
tcaagtggctattatgaatcagttgaaaagaactgctagatatttttgaaattctgaagatgtaatatctgtttatagctagctgtgtaataagttggat |
39125089 |
T |
|
| Q |
201 |
gaaggagtgtgctgccaagagatcacagagcttgtctgtgaagcaagcacatcttataaaaccaaataggtctaccgaactccaaaatttcaatattatg |
300 |
Q |
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| T |
39125090 |
gaaggagtgtgctgccaagagatcacagagcttgtctgtgaagcaagcacatcttataaaaccaaataggtctaccgaactccaaaatttcaatattatg |
39125189 |
T |
|
| Q |
301 |
acaattaatttaccttagcctatttccgcaacaaacaaataattcacaaattactgaaagaaaccatggaaccctttattcaagtttctcacaaaaaatt |
400 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39125190 |
acaattaatttaccttagcctatttccgcaacaaaaaaataattcacaaattactgaaagaaactatggaaccctttattcaagtttctcacaaaaaatt |
39125289 |
T |
|
| Q |
401 |
ataatttttatattatattccagatttaaagattccctatatgctctcagttagctttgttgcttgtaaatgtgtctggtttattttatcctaattttgt |
500 |
Q |
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| T |
39125290 |
ataatttttatattatattccagatttaaggataccctatatgctctccgttagctttgttgcttgtaaatgtgtctggtttattttatcctaattttgt |
39125389 |
T |
|
| Q |
501 |
tcttggtttttcaacaaggaaaaggaagttgacaaacattataatggtctcaatgtggtgctttattctgtttgttcaatttcacaggt |
589 |
Q |
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| T |
39125390 |
tcttggtttttcaacaaggaaaaggaagttgacaaacattataatggtctcaatgtggtgctttattctgtttgttcaatttcacaggt |
39125478 |
T |
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