View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12480_low_4 (Length: 468)
Name: NF12480_low_4
Description: NF12480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12480_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 79 - 354
Target Start/End: Original strand, 25927545 - 25927818
Alignment:
| Q |
79 |
tattgatattaaggtctatgtagaccctttgtacgaaaggccttgaaagaaaattcttcgtgagatgagttgttgtcatgggttcgagatgcagtagaga |
178 |
Q |
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| T |
25927545 |
tattgatattaaggtctctgtagaccctttgtatgaaaggccttgaaagaaaattcttcatgagatgagttgttctcatgggttcgagatgtagtagaga |
25927644 |
T |
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| Q |
179 |
agttatgatttatattgttatttcaaaatcaaataatgtagaaaatggctaaaaataatatgtgaaagagaaggtccggtaaagagtacaacaagttgag |
278 |
Q |
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| T |
25927645 |
agttatgatttatgttattatttcaaaatcagataatgtagaaaatggcaaaaaataatatgtgaaagagaaggtcatgtaaagagtacaacaagttgac |
25927744 |
T |
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| Q |
279 |
agagcataaaatcttagcatcaatgaaatgttaatattctcatttcaattaagaggttgcttattgtgtggtggtc |
354 |
Q |
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| T |
25927745 |
agagcataaaatcttagcatcaatgaaatgtgaatat--tcatttcgattaagaggttgcttattgtgtggtggtc |
25927818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 386 - 448
Target Start/End: Original strand, 25927822 - 25927884
Alignment:
| Q |
386 |
aatcatgagctgactcaattcttctaaggtcataaatatgcacaacatctaaaactagaagaa |
448 |
Q |
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| T |
25927822 |
aatcatgagctgactcaattcttctaaggtcataaatatgcacaacatctaaaaccagaagaa |
25927884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 25927143 - 25927199
Alignment:
| Q |
19 |
atctaaaataaaagttgatgtggaacaatctcatttgacgaatcatactaaccccta |
75 |
Q |
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| T |
25927143 |
atctgaaataaaagttgatgtggaacaatctcatttgacgaatcatactaacaccta |
25927199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 5720313 - 5720396
Alignment:
| Q |
134 |
cttcgtgagatgagttgttgtcatgggttcgagatgcagtagagaagttatga-tttatattgttatttcaaaatcaaataatg |
216 |
Q |
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| T |
5720313 |
cttcatgagaggagttgttgacataggttcgagatgaagaaaagaagttaggattttctattgtcatttcaaaatcgaataatg |
5720396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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