View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12481_high_1 (Length: 427)

Name: NF12481_high_1
Description: NF12481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12481_high_1
NF12481_high_1
[»] chr6 (1 HSPs)
chr6 (18-327)||(6256745-6257036)
[»] chr1 (3 HSPs)
chr1 (156-251)||(34462717-34462812)
chr1 (156-265)||(1640228-1640337)
chr1 (161-255)||(18919258-18919352)
[»] chr5 (2 HSPs)
chr5 (156-254)||(30208-30306)
chr5 (160-265)||(5736036-5736141)
[»] chr4 (2 HSPs)
chr4 (161-255)||(37861163-37861257)
chr4 (161-255)||(46963915-46964009)
[»] chr8 (2 HSPs)
chr8 (158-265)||(7637573-7637680)
chr8 (162-244)||(39699420-39699501)
[»] chr2 (3 HSPs)
chr2 (155-265)||(5577961-5578071)
chr2 (161-242)||(26009656-26009737)
chr2 (157-265)||(34074119-34074227)


Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 6256745 - 6257036
Alignment:
Q  18 actatatacgtggaaggtgatgtggacctacacatcaacatttaacaatgcaagtccatgtgcctaacggatggacttggcaatgagatttatttgatag 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||                  |||||||||||||||||||||||    
T  6256745 actatatacgtggaaggtgatgtggaccgacacatcaacatttaacagtgcaagtccat------------------tggcaatgagatttatttgatag 6256826  T
Q  118 acgtgaagtaaatcaagggatgaattgcctattttgaaaaggaaaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6256827 acgtgaagtaaatcaagggatgaattgcctattttgaaaaggaaaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaacttaat 6256926  T
Q  218 ttgtgaaattgtacattcaatgtcttggaaggttaaaaccatatttttggatttaatctgttttcaattcacaccagtagtgaaggagtgtgttgttgtc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  6256927 ttgtgaaattgtacattcaatgtcttggaaggttaaaaccatatttttggatttaatctgttttcaattcacaccaatagtgaaggagtgtgttgttgtt 6257026  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 34462717 - 34462812
Alignment:
Q  156 aaggaaaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggtt 251  Q
    |||| ||||| ||| ||||||| |||||  |||| ||  ||||||||||||||||||||| |||   ||||||| |||||||||||||| ||||||    
T  34462717 aaggtaaatgttaacttgtgcccttaagacacaagtttagaagtcaaatgtagaaatttatttttgaaaattgtgcattcaatgtcttgaaaggtt 34462812  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 265
Target Start/End: Complemental strand, 1640337 - 1640228
Alignment:
Q  156 aaggaaaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggttaaaa 255  Q
    |||||||||| ||| |||| || | |||| |||| ||  ||||| ||||||||||| |||||||   ||||||| |||||||||||||| ||| ||||||    
T  1640337 aaggaaaatggtaacttgtaccctaaaggcacaagtttagaagttaaatgtagaaacttaattttaaaaattgtgcattcaatgtcttgaaagtttaaaa 1640238  T
Q  256 ccatattttt 265  Q
     | |||||||    
T  1640237 acttattttt 1640228  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 255
Target Start/End: Original strand, 18919258 - 18919352
Alignment:
Q  161 aaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggttaaaa 255  Q
    ||||| ||| ||||||| |||||| |||| ||   ||| |||||||||||| ||| |||   ||||||| |||||||||||||| ||||||||||    
T  18919258 aaatgttaacttgtgcccttaaggcacaagtttataagccaaatgtagaaacttatttttgaaaattgtgcattcaatgtcttgaaaggttaaaa 18919352  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 30208 - 30306
Alignment:
Q  156 aaggaaaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggttaaa 254  Q
    |||| |||||||||  ||| || |||||| | || ||| |||| |||||||||||||| |||||   ||||||| |||||||||||||| |||||||||    
T  30208 aagggaaatgctaacatgtaccattaaggcataagttaagaagccaaatgtagaaattgaattttgaaaattgtccattcaatgtcttgaaaggttaaa 30306  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 265
Target Start/End: Complemental strand, 5736141 - 5736036
Alignment:
Q  160 aaaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggttaaaaccat 259  Q
    |||||| ||| ||||||| ||||| ||||| ||  | || |||||||||||| ||| |||  |||||||| |||||||||||||  || ||||||| | |    
T  5736141 aaaatgttaacttgtgcccttaagatacaagtttagtagccaaatgtagaaacttatttttggaaattgtgcattcaatgtcttcaaaagttaaaaactt 5736042  T
Q  260 attttt 265  Q
    ||||||    
T  5736041 attttt 5736036  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 255
Target Start/End: Original strand, 37861163 - 37861257
Alignment:
Q  161 aaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggttaaaa 255  Q
    ||||| ||| ||||||| |||||| |||| ||  |||  |||||||||||| |||||||  |||||||| |||||||||||||| ||| ||||||    
T  37861163 aaatgttaacttgtgcccttaaggcacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcattcaatgtcttgaaagtttaaaa 37861257  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 255
Target Start/End: Complemental strand, 46964009 - 46963915
Alignment:
Q  161 aaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggttaaaa 255  Q
    ||||| ||| ||||||| |||||| |||| ||  |||  |||||||||||| |||||||  ||||| || |||||||||||||| ||| ||||||    
T  46964009 aaatgttaacttgtgcccttaaggcacaagtttagaaaccaaatgtagaaacttaattttggaaatcgtgcattcaatgtcttgaaagtttaaaa 46963915  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 265
Target Start/End: Original strand, 7637573 - 7637680
Alignment:
Q  158 ggaaaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggttaaaacc 257  Q
    ||||||||||||||| || | |||||| |||| ||  |||||||||||||||| |||  |||   ||||||| |||||||||||||| || |||| || |    
T  7637573 ggaaaatgctaatttttgtccttaaggcacaagtttagaagtcaaatgtagaatttttcttttgaaaattgtgcattcaatgtcttgaaaagttacaaac 7637672  T
Q  258 atattttt 265  Q
     |||||||    
T  7637673 ttattttt 7637680  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 244
Target Start/End: Original strand, 39699420 - 39699501
Alignment:
Q  162 aatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttg 244  Q
    |||||||| |||| ||||||||  |||||||  |||||||||||||| |||||| |||   |||||||||||| |||||||||    
T  39699420 aatgctaacttgttcctttaagc-acaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttg 39699501  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 265
Target Start/End: Original strand, 5577961 - 5578071
Alignment:
Q  155 aaaggaaaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggttaaa 254  Q
    ||||| ||||| ||||||||| | |||||| |||| ||  |||  ||||||| ||||||||||||  |||||||| |||| ||| ||||| ||| |||||    
T  5577961 aaagggaaatgttaatttgtgtccttaaggcacaagtttagaaaccaaatgtcgaaatttaattttggaaattgtgcatttaatatcttgaaagtttaaa 5578060  T
Q  255 accatattttt 265  Q
    | | |||||||    
T  5578061 aacttattttt 5578071  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 26009737 - 26009656
Alignment:
Q  161 aaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtct 242  Q
    ||||||||| ||||||| |||||| |||| ||  ||||  |||||||||||| ||||||  ||||| || ||||||||||||    
T  26009737 aaatgctaacttgtgcccttaaggcacaagtttagaagctaaatgtagaaatataattttggaaatcgtgcattcaatgtct 26009656  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 265
Target Start/End: Original strand, 34074119 - 34074227
Alignment:
Q  157 aggaaaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggttaaaac 256  Q
    ||||||||||||| ||||||| | ||   |||| ||  ||||| |||||||||||||| ||||  ||||| || |||||||||| ||| ||| ||||||     
T  34074119 aggaaaatgctaacttgtgccctcaaaacacaagtttagaagttaaatgtagaaatttcattttggaaatcgtgcattcaatgttttgaaagtttaaaag 34074218  T
Q  257 catattttt 265  Q
    | |||||||    
T  34074219 cttattttt 34074227  T

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