View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12481_high_2 (Length: 414)
Name: NF12481_high_2
Description: NF12481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12481_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 27 - 411
Target Start/End: Complemental strand, 48132527 - 48132140
Alignment:
| Q |
27 |
atgccatgcacagaaattgttaggaagagaaggagtggatggacaagtatgtgtgcaaaattcatggccaattctaatagcaataaagtttctgatgaag |
126 |
Q |
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| T |
48132527 |
atgccatgcacagaaattgttaggaagagaaggagtggatggacaagtatgtgtgcaaaattcatggccaattctaatagcaataaagtttctgatgaag |
48132428 |
T |
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| Q |
127 |
atatggctactagtatgattagtagaagaaaaggagttcctcatagatctcctctttgttaattagtgttagctaccttaatcaataaaattaagctaag |
226 |
Q |
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| T |
48132427 |
atatggctactagtatgattagtagaagaaaaggagttcctcatagatctcctctttgttaattagtgttagctaccttaatcaataaaattaagctaag |
48132328 |
T |
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| Q |
227 |
ctaagcagtagcacaaagagctnnnnnnncattttactactacttcaatatttaa-nnnnnnnaattacttctatgacatgatgttttgactgaagtgaa |
325 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48132327 |
ctaagcagtagcacaaagagctaaaaaaacattttactactacttcaatatttaattttttttaattacttctatgacatgatgttttgactgaagtgaa |
48132228 |
T |
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| Q |
326 |
ttgttcaaagttctttctctctcgaaattgaag--nnnnnnnngtttaattaatcacttggtcgggggttttgtcttaatggtatcac |
411 |
Q |
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| T |
48132227 |
ttgttcaaagttctttctctctcgaaattgaagttttttttttgtttaattaatcacttggtcgggggttttgtcttaatggtatcac |
48132140 |
T |
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