View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12481_high_4 (Length: 296)
Name: NF12481_high_4
Description: NF12481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12481_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 5 - 287
Target Start/End: Complemental strand, 8946724 - 8946442
Alignment:
| Q |
5 |
ataatggctgcaattgatgccgcaatatcggacggtgttgatgttctttcgatttcattaggtccaacttttgatttacctttgaatgaagatccgattg |
104 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8946724 |
ataatggctgcaattgatgctgcaatatcggacggtgttgatgttctttcgatttcattaggtccaacttttgatttacctttgaatgaagatccgattg |
8946625 |
T |
|
| Q |
105 |
caatagcctcttttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaatgacggccccgattttaaaactcttcgcaatggaacaccttg |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8946624 |
caatagcctcttttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaatgacggccccgattttaaaactcttcgcaatggaacaccatg |
8946525 |
T |
|
| Q |
205 |
gttgacaactgttgctgctggtactgtggatcgtgagtttcatgcgaatcttacacttggtaatggagtctcactcacaggtt |
287 |
Q |
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| T |
8946524 |
gttgacaactgttgctgctggtactatggatcgtgaatttcatgcgactcttacacttggtaatggagtctcactcacaggtt |
8946442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 11 - 282
Target Start/End: Original strand, 8962372 - 8962643
Alignment:
| Q |
11 |
gctgcaattgatgccgcaatatcggacggtgttgatgttctttcgatttcattagg-tccaacttttgatttacctttgaatgaagatccgattgcaata |
109 |
Q |
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| T |
8962372 |
gctgcaattgatgccgcaatatcagacggtgtggatgttctttcaatatcattaggcttcaacaatgcatctaa-tttgtatgaagatccaattgcaata |
8962470 |
T |
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| Q |
110 |
gcctcttttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaatgacggccccgattttaaaactcttcgcaatggaacaccttggttga |
209 |
Q |
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| T |
8962471 |
gccacttttgcagctatggaaaaaggtgtttttgtgtctacttcagcaggtaataatggaccttcctttaacactcttcacaatggaataccatgggtga |
8962570 |
T |
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| Q |
210 |
caactgttgctgctggtactgtggatcgtgagtttcatgcgaatcttacacttggtaatggagtctcactcac |
282 |
Q |
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||||||||||||| ||||| | |||||||| ||| || ||||||||||||||||||||||||||||||||| |
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| T |
8962571 |
taactgttgctgctagtactttagatcgtgaattttttgggaatcttacacttggtaatggagtctcactcac |
8962643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 280
Target Start/End: Original strand, 8973765 - 8974037
Alignment:
| Q |
5 |
ataatggctgcaattgatgccgcaatatcggacggtgttgatgttctttcgatttcattaggtcc-aacttttgatttacctttgaatgaagatccgatt |
103 |
Q |
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| T |
8973765 |
ataatagccgcagttgatgcctcaatatcggacggtgttgatgttctttcaatatcactaggtttgaaca----atgtatctttgtatgaagatccagtc |
8973860 |
T |
|
| Q |
104 |
gcaatagcctcttttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaatgacggccccgattttaaaactcttcgcaatggaacacctt |
203 |
Q |
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||||| ||| ||||| |||||||||||| ||| || |||||||| ||||||||||||||| || || ||||||||||||| |||||||| ||| | |
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| T |
8973861 |
gcaattgccactttttcagctatggaaaggggtgttgttgtgtctacttcagcaggtaatgatggaccttcctttaaaactcttcacaatggaataccat |
8973960 |
T |
|
| Q |
204 |
ggttgacaactgttgctgctggtactgtggatcgtgagtttcatgcgaatcttacacttggtaatggagtctcactc |
280 |
Q |
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|| | | ||| |||||||| ||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
8973961 |
gggtaataaccgttgctgcaagtactttggatcgtgagtttcgtgggaatcttacacttggtaatggagtctcactc |
8974037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 270
Target Start/End: Original strand, 8957463 - 8957617
Alignment:
| Q |
116 |
tttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaatgacggccccgattttaaaactcttcgcaatggaacaccttggttgacaactg |
215 |
Q |
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||||||||||||||||||||| ||||||| || |||||| |||||| | || || | || ||||||||| |||||||||||||||| | | ||||| |
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| T |
8957463 |
tttgcagctatggaaaaaggtgtttttgtttccacttcagctggtaataatggtcctgcccttgaaactcttcacaatggaacaccttgggtcataactg |
8957562 |
T |
|
| Q |
216 |
ttgctgctggtactgtggatcgtgagtttcatgcgaatcttacacttggtaatgg |
270 |
Q |
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| T |
8957563 |
tggctgctggaactatggatagagaatttcaagggacccttacacttggaaatgg |
8957617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 8957364 - 8957404
Alignment:
| Q |
14 |
gcaattgatgccgcaatatcggacggtgttgatgttctttc |
54 |
Q |
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| T |
8957364 |
gcaattgacgcggcaatatcagacggtgttgatgttctttc |
8957404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 287
Target Start/End: Complemental strand, 21687869 - 21687590
Alignment:
| Q |
5 |
ataatggctgcaattgatgccgcaatatcggacggtgttgatgttctttcgatttcattaggtccaacttttgatttacctttgaatgaagatccgattg |
104 |
Q |
| |
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||||| |||||||||||||| |||||||| ||||||||||| ||||||| || ||| | || | | |||| | | |||| || ||||||| ||| |
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| T |
21687869 |
ataatagctgcaattgatgctgcaatatctgacggtgttgacattctttcaatatcacttggctc---tgatgatcttcttttgtataaagatccagttg |
21687773 |
T |
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| Q |
105 |
caatagcctcttttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaatgacggccccgattttaaaactcttcgcaatggaacaccttg |
204 |
Q |
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|||| || | ||||||||||||||||||||||||||||||||| ||| ||||||||| | || ||| |||||| || ||| ||||||| ||| || |
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| T |
21687772 |
caattgcgacatttgcagctatggaaaaaggtatttttgtgtctacttctgcaggtaataatggaccctcgtttaaatctattcataatggaataccatg |
21687673 |
T |
|
| Q |
205 |
gttgacaactgttgctgctggtactgtggatcgtgagtttcatgcgaatcttacacttggtaatggagtctcactcacaggtt |
287 |
Q |
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| ||| ||||||||||||||||||| |||||||||| ||| | | | |||||||||||||||||||||||||||| |||| |
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| T |
21687672 |
ggtgataactgttgctgctggtactttggatcgtgaatttttaggaactgttacacttggtaatggagtctcactcactggtt |
21687590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 30099260 - 30099332
Alignment:
| Q |
90 |
atgaagatccgattgcaatagcctcttttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaa |
162 |
Q |
| |
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|||||||||| || |||||||| || |||||||||||||||||||| ||| |||| || | ||| |||||||| |
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| T |
30099260 |
atgaagatcctatagcaatagcttcatttgcagctatggaaaaagggattgttgtttcatcttctgcaggtaa |
30099332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 30091653 - 30091581
Alignment:
| Q |
90 |
atgaagatccgattgcaatagcctcttttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaa |
162 |
Q |
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| T |
30091653 |
atgaagatgctatagcaatagcttcttttgcagctatggagaaagggattgttgtttcgtcttctgcaggtaa |
30091581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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