View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12481_high_6 (Length: 271)
Name: NF12481_high_6
Description: NF12481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12481_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 22568949 - 22569210
Alignment:
| Q |
18 |
catacattatataaaagaaaaactacaaggtcattgaaactaccagagaaaaacattgagattaatcataacacaacttgtccccaaaattaaaattgat |
117 |
Q |
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| T |
22568949 |
catacattatataaaagaaaaactacaaggtcattgaaactaccagagaaaaacattgagattaatcataacacaacttgtccccaaaattaaaattgat |
22569048 |
T |
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| Q |
118 |
gtattatcagcaatagcctcaataattttaatgttgatcagatattcttcaggacaacttgtttgaatcagctttaatactcgaagttggaaaacacggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22569049 |
gtattatcagcaatagcctcaataattttaatgttgatcagatattcttcaggacaacttgtttgaatcagctttaatactcgaagttggaaaacacggt |
22569148 |
T |
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| Q |
218 |
accaatgatactttccat--------gtgttggtcctggcgatgatgaccgagaatcctcat |
271 |
Q |
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||||||||| |||||||| ||||||||| ||| |||||||||||||||||||||| |
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| T |
22569149 |
accaatgatgctttccatgaagacgagtgttggtcttggtgatgatgaccgagaatcctcat |
22569210 |
T |
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