View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12481_low_1 (Length: 460)

Name: NF12481_low_1
Description: NF12481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12481_low_1
NF12481_low_1
[»] chr8 (1 HSPs)
chr8 (9-445)||(13030831-13031268)
[»] chr4 (6 HSPs)
chr4 (142-299)||(33145337-33145495)
chr4 (166-247)||(24132570-24132651)
chr4 (367-416)||(24132755-24132804)
chr4 (9-84)||(24132412-24132487)
chr4 (261-308)||(14292413-14292461)
chr4 (261-308)||(14308462-14308510)
[»] chr6 (2 HSPs)
chr6 (199-296)||(12645339-12645436)
chr6 (369-416)||(27849674-27849721)
[»] chr5 (2 HSPs)
chr5 (22-84)||(41385731-41385793)
chr5 (368-416)||(32873972-32874020)
[»] chr7 (1 HSPs)
chr7 (259-299)||(45716715-45716755)


Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 9 - 445
Target Start/End: Complemental strand, 13031268 - 13030831
Alignment:
Q  9 cagaacctgtgcgccaagaaaaaccttctttgatggcatttttagcatggatgatggaggaccaagtaggtgaatcagtggtgtgagt-attataaaaag 107  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  13031268 cagaacccgtgcgccaagaaaaaccttctttgatggcatttttagcatggatgatggaggaccaagtaggtgaatcagtggtgtgagtgattttaaaaag 13031169  T
Q  108 aatcttaggaccaactggatatctatttgataataggtcgacccaaagctttgaggaggattggagcatataccagacaagtttacccaaaagacaaata 207  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13031168 aatcttaggaccaactggatatctattggataataggtcgacccaaagctttgagaaggattggagcatataccagacaagtttacccaaaagacaaata 13031069  T
Q  208 ttagtttctcaagttgttcagattcccaaaccaccttgatgttttgagcgtgcaattttgttccaaccaactagatgaatttctttgttattgagtctct 307  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13031068 ttagtttctctagttgttcagattcccaaaccaccttgatgctttgagcgtgcaattttgttccaaccaactagatgaatttctttgttattgagtctct 13030969  T
Q  308 ctagatgaaattacgggagactctattacgggtgatttgatctatgttgtcacacacacactttgagggagccaagcaatctacatgtagtaagatggga 407  Q
    | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13030968 ccagatgaaattacgggagactcaattacgggtgatttgatctatgttgtcacacacacactttaagggagccaagcaatctacatgtagtaagatggga 13030869  T
Q  408 tggaggaaattaaaggtgcaagagtcaatctactctct 445  Q
    ||||||||| | ||||||||||||||||||||| ||||    
T  13030868 tggaggaaagtgaaggtgcaagagtcaatctacactct 13030831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 142 - 299
Target Start/End: Original strand, 33145337 - 33145495
Alignment:
Q  142 aggtcgacccaaagctttgaggaggattggagcatataccagacaagtttacccaaaagacaaata-ttagtttctcaagttgttcagattcccaaacca 240  Q
    |||||||||||||| || ||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||| ||| ||||  ||||||||||||    
T  33145337 aggtcgacccaaagatt-gaggaggattggagcatatcccagacaagtttactcaaaagaaaaatatttagtttctctagtcgttctaattcccaaacca 33145435  T
Q  241 ccttgatg-ttttgagcgtgcaattttgttccaaccaactagatgaatttctttgttatt 299  Q
    |||||||| ||| | ||| ||||||||||||||||||||||||||||||  |||||||||    
T  33145436 ccttgatgctttggcgcgggcaattttgttccaaccaactagatgaattcatttgttatt 33145495  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 24132570 - 24132651
Alignment:
Q  166 gattggagcatataccagacaagtttacccaaaagacaaatattagtttctcaagttgttcagattcccaaaccaccttgat 247  Q
    ||||| |||| || ||| |||||||| || | |||||||||||||||||| | || ||||| ||||||||| ||||||||||    
T  24132570 gattgaagcaaatcccaaacaagtttgccaataagacaaatattagtttccctagctgttctgattcccaagccaccttgat 24132651  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 416
Target Start/End: Original strand, 24132755 - 24132804
Alignment:
Q  367 actttgagggagccaagcaatctacatgtagtaagatgggatggaggaaa 416  Q
    ||||||||||||||||||||||| ||| || |||||||||||||| ||||    
T  24132755 actttgagggagccaagcaatctgcatataataagatgggatggatgaaa 24132804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 24132412 - 24132487
Alignment:
Q  9 cagaacctgtgcgccaagaaaaaccttctttgatggcatttttagcatggatgatggaggaccaagtaggtgaatc 84  Q
    ||||||| | ||||||||  ||||| |||||||  |||||||||||||| ||||| || |||||||| ||||||||    
T  24132412 cagaacccgagcgccaagtgaaaccatctttgagagcatttttagcatgcatgatagaagaccaagttggtgaatc 24132487  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 14292461 - 14292413
Alignment:
Q  261 aattttgttccaaccaactagatgaatttctttgttatt-gagtctctc 308  Q
    |||||||||||||||||| ||||||||  |||||||||| |||||||||    
T  14292461 aattttgttccaaccaaccagatgaatacctttgttattagagtctctc 14292413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 14308510 - 14308462
Alignment:
Q  261 aattttgttccaaccaactagatgaatttctttgttatt-gagtctctc 308  Q
    |||||||||||||||||| ||||||||  |||||||||| |||||||||    
T  14308510 aattttgttccaaccaaccagatgaatacctttgttattagagtctctc 14308462  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 296
Target Start/End: Original strand, 12645339 - 12645436
Alignment:
Q  199 agacaaatattagtttctcaagttgttcagattcccaaaccaccttgatgttttgagcgtgcaattttgttccaaccaactagatgaatttctttgtt 296  Q
    |||||||||||||||| || || ||||| ||||||||| |||||||||  |||||  |  |||||||| |||||||||||||||| |||  |||||||    
T  12645339 agacaaatattagtttatctagctgttctgattcccaagccaccttgaaattttggtctagcaatttttttccaaccaactagataaatgcctttgtt 12645436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 416
Target Start/End: Original strand, 27849674 - 27849721
Alignment:
Q  369 tttgagggagccaagcaatctacatgtagtaagatgggatggaggaaa 416  Q
    ||||||| ||||||||||||| |||||||||||| || ||||||||||    
T  27849674 tttgaggaagccaagcaatctgcatgtagtaagaaggaatggaggaaa 27849721  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 41385793 - 41385731
Alignment:
Q  22 ccaagaaaaaccttctttgatggcatttttagcatggatgatggaggaccaagtaggtgaatc 84  Q
    |||||| ||||| |||||||  |||||||||||||| |||||||| ||||| | |||||||||    
T  41385793 ccaagagaaaccgtctttgagagcatttttagcatgcatgatggaagaccatgcaggtgaatc 41385731  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 416
Target Start/End: Original strand, 32873972 - 32874020
Alignment:
Q  368 ctttgagggagccaagcaatctacatgtagtaagatgggatggaggaaa 416  Q
    |||||||| ||||||| || || ||||||||| ||||||||||||||||    
T  32873972 ctttgaggaagccaagtaacctgcatgtagtacgatgggatggaggaaa 32874020  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 45716715 - 45716755
Alignment:
Q  259 gcaattttgttccaaccaactagatgaatttctttgttatt 299  Q
    |||||||||||||||||||| ||||||||  ||||||||||    
T  45716715 gcaattttgttccaaccaaccagatgaatacctttgttatt 45716755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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