View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12481_low_6 (Length: 295)
Name: NF12481_low_6
Description: NF12481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12481_low_6 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 20366292 - 20366029
Alignment:
| Q |
14 |
cctgtgtacccgagagttttcgtgcaccggattgccccttaatctttcaccatcacgtctttatatctcaactcacaagttgttatgttctactattcaa |
113 |
Q |
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| T |
20366292 |
cctgtgtacccgagagttttcgtgcaccggattgccccttaatctttcaccatcacgtctttatatctcaactcacaagttgttatgttctactattcaa |
20366193 |
T |
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| Q |
114 |
cctatgaaatttttatttcaacaataattttctaagtggaaaagtaagaggaatggagaaatttaatgaagtgtaaataaagacgtaaaaaggaaacatg |
213 |
Q |
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| T |
20366192 |
cctatgaaatttttatttcaacaataattttctaagtggaaaagtaagaggaatggagaaatttaatgaagtgtaaataaagacgtaaaaaggaaacatg |
20366093 |
T |
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| Q |
214 |
gaaatttaaactaaatttgtagtctttaatagtactaattgtgtaaagacttagtgctattaat |
277 |
Q |
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| T |
20366092 |
gaaatttaaactaaatttgtagtctttaatagtactaattgtgtaaagacttagtgctattaat |
20366029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 52 - 265
Target Start/End: Complemental strand, 20386491 - 20386280
Alignment:
| Q |
52 |
ttaatctttcaccatcacgtctttatatctcaactcacaagttgttatgttctactattcaacctatgaaatttttatttcaacaataattttctaagtg |
151 |
Q |
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| T |
20386491 |
ttaatctttcaccatcacgtctttatatctcaactcataagatgttatgttctactattcaatctatgaaatttttatttcaacaataattttttaagtg |
20386392 |
T |
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| Q |
152 |
gaaaagtaagaggaatggagaaatttaatgaagtgtaaataaagacgtaaaaaggaaacatggaaatttaaactaaatttgtagtctttaatagtactaa |
251 |
Q |
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| T |
20386391 |
ggaaaataagaggaatggagaaa-ttaatgaagtgtaaataaagatgt-aaaagggaatttggaaattcaaactaaatttgtagtctttaatagtactaa |
20386294 |
T |
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| Q |
252 |
ttgtgtaaagactt |
265 |
Q |
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| T |
20386293 |
ttgggtaaagactt |
20386280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 20373887 - 20373727
Alignment:
| Q |
14 |
cctgtgtacccgagagttttcgtgcaccggattgccccttaatctttcaccatcacgtctttatatctcaactcacaagttgttatgttctactattcaa |
113 |
Q |
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|||| |||||||||| ||| |||||| ||| ||||| ||||| |||||||| | ||||||||| ||| |||||| ||| |||||||||||||||||||| |
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| T |
20373887 |
cctgcgtacccgagaactttagtgcactggactgccctttaatttttcacca-ctcgtctttatgtctaaactcataagatgttatgttctactattcaa |
20373789 |
T |
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| Q |
114 |
cctatgaaatttttatttcaacaataa-ttttctaagtggaaaagtaagaggaatggagaaa |
174 |
Q |
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|||| |||||||||||||||||||||| |||| |||||| |||||||||||| ||||||||| |
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| T |
20373788 |
cctacgaaatttttatttcaacaataatttttttaagtgaaaaagtaagagggatggagaaa |
20373727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 20366640 - 20366531
Alignment:
| Q |
72 |
ctttatatctcaactcacaagttgttatgttctactattcaacctatgaaatttttatttcaacaataa-ttttctaagtggaaaagtaagaggaatgga |
170 |
Q |
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|||||| ||| |||||| ||| ||||||||||||||||| |||||| |||| ||||||||||||||||| |||| |||||| |||||||||||| ||||| |
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| T |
20366640 |
ctttatgtctaaactcataagatgttatgttctactatttaacctacgaaaattttatttcaacaataatttttttaagtgaaaaagtaagagggatgga |
20366541 |
T |
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| Q |
171 |
gaaatttaat |
180 |
Q |
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| T |
20366540 |
gaaatttaat |
20366531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 43446 - 43385
Alignment:
| Q |
58 |
tttcaccatcacgtctttatatctcaactcacaagttgttatgttctactattcaacctatg |
119 |
Q |
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|||||||||||| |||||||||||||| ||| ||| ||| | || |||||||||||||||| |
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| T |
43446 |
tttcaccatcacttctttatatctcaattcataagatgtaacattttactattcaacctatg |
43385 |
T |
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