View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12483_high_1 (Length: 400)
Name: NF12483_high_1
Description: NF12483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12483_high_1 |
 | |
|
| [»] scaffold0726 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 148 - 385
Target Start/End: Original strand, 24774206 - 24774451
Alignment:
| Q |
148 |
aaaaaccagcaattcatttacgttttacaattaatgtttttaaatgattgctaaaaatttaagaatacattag----agtcgaaaaataatgaagtcata |
243 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
24774206 |
aaaaaacagcaatccatttacgttttacaattaatgttttttaatgattgctaaaaatttaagaatacattagctagagtcgaaaaataatgaagacata |
24774305 |
T |
|
| Q |
244 |
cctcaaatagagtctttagctcaaacaaagtcttctacactgctattaatgtttctaacaaaaagtgtt----ctagaaggctgttcaacaaaaggaagt |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
24774306 |
cctcaaatagagtctttagctcaaacaaagtcttctacactgctattaatgtttctaacaaaaagtgttctagctagaaggctgttcaacaaaatgaagt |
24774405 |
T |
|
| Q |
340 |
tttcctttagaacctccaaagaaaccatgatctccatccaaaccac |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24774406 |
tttcctttagaacctccaaagaaaccatgatctccatccaaaccac |
24774451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 24754811 - 24754899
Alignment:
| Q |
26 |
actagggttaggtgatttgttttgggctttttatcatcgggcttcatatcaaaacagacaccaaagaaataaactaaagagaaactcttt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||||||||| |
|
|
| T |
24754811 |
actagggttaggtgatttgttttgggctttttatcatcgggcttcatatcaaaacagacacgaaacaaataaact-aagaaaaactcttt |
24754899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 24763808 - 24763896
Alignment:
| Q |
26 |
actagggttaggtgatttgttttgggctttttatcatcgggcttcatatcaaaacagacaccaaagaaataaactaaagagaaactcttt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||||||||| |
|
|
| T |
24763808 |
actagggttaggtgatttgttttgggctttttatcatcgggcttcatatcaaaacagacacgaaacaaataaact-aagaaaaactcttt |
24763896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 24994744 - 24994678
Alignment:
| Q |
20 |
aaaagcactagggttaggtgatttgttttgggctttttatcatcgggcttcatatcaaaacagacac |
86 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24994744 |
aaaagcactagggttaggtgatttgtttcgggctttttatcatcgggcttcatatcaaaatagacac |
24994678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 334
Target Start/End: Original strand, 45041414 - 45041476
Alignment:
| Q |
272 |
agtcttctacactgctattaatgtttctaacaaaaagtgttctagaaggctgttcaacaaaag |
334 |
Q |
| |
|
|||||||| || ||||| ||||||||| |||||||||||||||||||| |||||| |||||| |
|
|
| T |
45041414 |
agtcttctgcattgctagtaatgtttccaacaaaaagtgttctagaagattgttcaccaaaag |
45041476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 121 - 385
Target Start/End: Original strand, 40161319 - 40161586
Alignment:
| Q |
121 |
tatctccatattgctgccag-----gaagaagaaaaaccagcaattcatttacgttttacaattaatgtttttaaatgattgctaaaaatttaagaatac |
215 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||||| ||||||| |||||||||||||| ||| ||||| ||||||||||||||||||||| |
|
|
| T |
40161319 |
tatctccatattgctgccagaaaaagaaaaagaaaacatagcaatccatttacattttacaattaatgctttgaaatgtttgctaaaaatttaagaatac |
40161418 |
T |
|
| Q |
216 |
attagagtcgaaaaata--atgaagtcatacctcaaatagagtctttagctcaaacaaagtcttctacactgctattaatgtttctaacaaaaagtgttc |
313 |
Q |
| |
|
||||| ||||||||| | |||||| ||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40161419 |
attagcgtcgaaaaaaagaatgaagacatacctcaaacagagtctttagttcaaa----gtcttctacgctgctattaatgtttctaacaaaaagtgttc |
40161514 |
T |
|
| Q |
314 |
tagaaggctgttcaacaaaaggaagttttcctttagaacctccaaagaaaccatgatctccatccaaaccac |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40161515 |
tagaaggctgttcaacaaaaggaagttttcctttagaacctccaaagaaaccatgatctccatccaaaccac |
40161586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 6734 - 6800
Alignment:
| Q |
20 |
aaaagcactagggttaggtgatttgttttgggctttttatcatcgggcttcatatcaaaacagacac |
86 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6734 |
aaaagcactagggttaggtgatttgtttcgggctttttatcatcgggcttcatatcaaaatagacac |
6800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University