View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12483_high_5 (Length: 215)
Name: NF12483_high_5
Description: NF12483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12483_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 40063910 - 40064090
Alignment:
| Q |
18 |
atgttggttgttgcttaaaaaagtgtctttactatctaatacaatatcaggaaaacattcatggcagtgaaggaaatcagctacacaaggtgtgatccta |
117 |
Q |
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| T |
40063910 |
atgttggttgttgcttaaaaaagtgtctttactatctgatacaatgtcaggaaaacattcatggcagtgaaggaaatcagcaacacaaggtgtgatccta |
40064009 |
T |
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| Q |
118 |
gtaaatcttttggccataagttagtcacttggtcaagaaacagtgagtgaaattctgcattcgtcgtgtgttatctgagag |
198 |
Q |
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| T |
40064010 |
gcaaatcttttggccataagttagtcacttggtcaagaaacagtgagtgaaattctgcattcgtcgtgtgttatctgagag |
40064090 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 9206809 - 9206773
Alignment:
| Q |
21 |
ttggttgttgcttaaaaaagtgtctttactatctaat |
57 |
Q |
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| T |
9206809 |
ttggttgttgcttaaaaaagtgtctttgctatctaat |
9206773 |
T |
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