View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12483_low_1 (Length: 647)

Name: NF12483_low_1
Description: NF12483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12483_low_1
NF12483_low_1
[»] chr2 (9 HSPs)
chr2 (19-637)||(40058413-40059038)
chr2 (255-637)||(40084605-40084976)
chr2 (418-637)||(40076832-40077052)
chr2 (193-241)||(15861133-15861181)
chr2 (195-241)||(39606952-39606998)
chr2 (319-372)||(40076726-40076780)
chr2 (138-167)||(25215519-25215548)
chr2 (190-235)||(45281492-45281537)
chr2 (190-235)||(45287953-45287998)
[»] chr8 (4 HSPs)
chr8 (183-241)||(39910475-39910533)
chr8 (138-167)||(28962108-28962137)
chr8 (183-228)||(43295959-43296004)
chr8 (181-221)||(30114811-30114851)
[»] chr4 (9 HSPs)
chr4 (551-638)||(22016596-22016683)
chr4 (138-168)||(44310016-44310046)
chr4 (183-241)||(46462391-46462449)
chr4 (138-167)||(5597534-5597563)
chr4 (140-169)||(10998962-10998991)
chr4 (138-167)||(51268753-51268782)
chr4 (138-166)||(7627334-7627362)
chr4 (138-166)||(34745723-34745751)
chr4 (193-241)||(46462461-46462509)
[»] chr1 (6 HSPs)
chr1 (183-241)||(34500162-34500220)
chr1 (184-239)||(37096170-37096225)
chr1 (182-232)||(47507584-47507634)
chr1 (182-226)||(19771171-19771215)
chr1 (132-168)||(23452539-23452575)
chr1 (197-241)||(28456861-28456905)
[»] chr5 (11 HSPs)
chr5 (183-238)||(39933348-39933403)
chr5 (181-241)||(22626810-22626870)
chr5 (182-221)||(27094316-27094355)
chr5 (192-241)||(8955351-8955400)
chr5 (138-167)||(19206393-19206422)
chr5 (182-259)||(21488280-21488357)
chr5 (138-167)||(34631984-34632013)
chr5 (138-166)||(5019565-5019593)
chr5 (193-241)||(13689087-13689135)
chr5 (138-166)||(22118668-22118696)
chr5 (184-240)||(27385480-27385536)
[»] chr7 (6 HSPs)
chr7 (182-259)||(27115305-27115382)
chr7 (182-227)||(24163343-24163388)
chr7 (138-167)||(27128860-27128889)
chr7 (181-238)||(31741949-31742006)
chr7 (183-239)||(23852561-23852617)
chr7 (138-166)||(43311579-43311607)
[»] scaffold0014 (2 HSPs)
scaffold0014 (182-232)||(133207-133257)
scaffold0014 (138-167)||(20133-20162)
[»] chr3 (5 HSPs)
chr3 (182-236)||(43493866-43493920)
chr3 (185-238)||(19227169-19227222)
chr3 (138-167)||(51883985-51884014)
chr3 (138-166)||(21533534-21533562)
chr3 (138-166)||(22632179-22632207)
[»] scaffold0018 (1 HSPs)
scaffold0018 (181-238)||(153979-154036)
[»] chr6 (1 HSPs)
chr6 (183-223)||(21162433-21162473)


Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 19 - 637
Target Start/End: Original strand, 40058413 - 40059038
Alignment:
Q  19 cttttatggcaaatccagagtcacatttactacaaaaaatgttgcattttgccaaggatcaatgatcggagcaagcactcttggcaaaaatgtgaggggt 118  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||    
T  40058413 cttttatggcaaattcagagtcacatttactataaaaaatgttgcattttgccaaggatcaatgaccggagcatgcactcctggcaaaaatgtgaggggt 40058512  T
Q  119 catgccaggagaatatgctcctggcaaaatgcaacatttcttgtagtgattatttgctaagctatatagaccatatacattatttattcattgaatttaa 218  Q
    |||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40058513 catgtcaggagaatatgctcctgacaaaatgcaacattttttgtagtgattatttgctaagctatatagaccatatacattatttattcattgaatttaa 40058612  T
Q  219 aaagtgaaaaattgtttataatttggacctgacggagtattaccttgttcctcctcgtagaatgtacattatatatagctagttagctacacatgttata 318  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40058613 aaagtgaaaaattgtttataatttggacttgacggagtattaccttgtttctcctcatagaatgtacattatatatagctagttagctacacatgttata 40058712  T
Q  319 ttacccttgttcttcttctaagcatcatcacttacatttcacatccacgtgacc-----nnnnnnncacat--gtaacaaataaaccaaaccaaaccaaa 411  Q
    |||| ||||||||||||| |||||||||||||||||||||||| ||||||||||            |||||  ||||||||||||||||||||||    |    
T  40058713 ttactcttgttcttcttcaaagcatcatcacttacatttcacacccacgtgaccaaaaaatacaaacacatgcgtaacaaataaaccaaaccaaagttca 40058812  T
Q  412 gtccaatctttccttccctagtgagtttctttttctctttttggatcattcattcttcc-aaataattaccatgagagccactgaaattgtgttggttct 510  Q
     | || || ||| ||||||||||||||||||| ||| ||||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  40058813 -ttcattccttctttccctagtgagtttctttctctatttttggttcattcattcttccaaaataattaccatgagagcctttgaaattgtgttggttct 40058911  T
Q  511 gctttggttcttaccaacaatgttttgcaccaatgtggattatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctatt 610  Q
     ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40058912 actttggttcctaccaaaaatgttttgcaccaatgtggattatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctatt 40059011  T
Q  611 cactaccctcgtagtactccacaggtt 637  Q
    |||||||||||||||||||||||||||    
T  40059012 cactaccctcgtagtactccacaggtt 40059038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 255 - 637
Target Start/End: Original strand, 40084605 - 40084976
Alignment:
Q  255 gtattaccttgttcctcctcgtagaatgtacattatatatagctagttagctacacatgttatattacccttgttcttcttctaagcatcatcacttaca 354  Q
    ||||||||||||| |||||| ||||||||||||||||||||            ||| ||||||||||| | |||||||||||||||||||||||||||||    
T  40084605 gtattaccttgtttctcctcatagaatgtacattatatata------------cacgtgttatattactcatgttcttcttctaagcatcatcacttaca 40084692  T
Q  355 tttcacatccacgtgaccnnnnnnncacatgtaacaaataaaccaaaccaaaccaaagtccaatctttccttccctagtgagtttctttttctctttttg 454  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40084693 tttcacatccacgtgaccaaaaaaacacatgtaacaaataaaccaaaccaaaccaaagtccaatctttccttccctagtgagtttctttttctctttttg 40084792  T
Q  455 gatcattcattcttcca-aataattaccatgagagccactgaaattgtgttggttctgctttggttcttaccaacaatgttttgcaccaatgtggattat 553  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40084793 gatcattcattcttctagaataattaccatgagagccactgaaattgtgttggttctgctttggttcttaccaacaatgttttgcaccaatgtggattat 40084892  T
Q  554 gaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacaggtt 637  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40084893 gatcatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacaggtt 40084976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 418 - 637
Target Start/End: Original strand, 40076832 - 40077052
Alignment:
Q  418 tctttccttccctagtgagtttctttttctctttttggatcattcattcttccaaa-taattaccatgagagccactgaaattgtgttggttctgctttg 516  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||  |||||||||||||||||| |||||    
T  40076832 tctttccttcactagtgagtttctttttctctctttggttcattcattcttccaaaataattaccatgagagcctttgaaattgtgttggttctactttg 40076931  T
Q  517 gttcttaccaacaatgttttgcaccaatgtggattatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactac 616  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40076932 gttcctaccaaaaatgttttgcaccaatgtggattatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactac 40077031  T
Q  617 cctcgtagtactccacaggtt 637  Q
    |||||||||||||||||||||    
T  40077032 cctcgtagtactccacaggtt 40077052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 15861181 - 15861133
Alignment:
Q  193 atacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 241  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||||||    
T  15861181 atacatcatttatttaatgaatttaaaaagtgaaaaattgtttataatt 15861133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 39606952 - 39606998
Alignment:
Q  195 acattatttattcattgaatttaaaaagtgaaaaattgtttataatt 241  Q
    |||||||||||||| | |||||||||||| |||||||||||||||||    
T  39606952 acattatttattcaataaatttaaaaagtaaaaaattgtttataatt 39606998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 40076726 - 40076780
Alignment:
Q  319 ttacccttgttcttctt-ctaagcatcatcacttacatttcacatccacgtgacc 372  Q
    |||| |||||||||||| | || ||||||||||||||||||||| ||||||||||    
T  40076726 ttactcttgttcttcttacaaaccatcatcacttacatttcacacccacgtgacc 40076780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 25215548 - 25215519
Alignment:
Q  138 cctggcaaaatgcaacatttcttgtagtga 167  Q
    ||||||||||||||||||||||||||||||    
T  25215548 cctggcaaaatgcaacatttcttgtagtga 25215519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 45281537 - 45281492
Alignment:
Q  190 catatacattatttattcattgaatttaaaaagtgaaaaattgttt 235  Q
    |||||| |||||||||||| | |||||||||| |||||||||||||    
T  45281537 catatatattatttattcaataaatttaaaaaatgaaaaattgttt 45281492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 45287998 - 45287953
Alignment:
Q  190 catatacattatttattcattgaatttaaaaagtgaaaaattgttt 235  Q
    |||||| |||||||||||| | |||||||||| |||||||||||||    
T  45287998 catatatattatttattcaataaatttaaaaaatgaaaaattgttt 45287953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 39910533 - 39910475
Alignment:
Q  183 tatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 241  Q
    ||||||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  39910533 tatagaccacatacattatttattcaatgaatctaaaaagtgaaaaattgcttataatt 39910475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 167
Target Start/End: Original strand, 28962108 - 28962137
Alignment:
Q  138 cctggcaaaatgcaacatttcttgtagtga 167  Q
    ||||||||||||||||||||||||||||||    
T  28962108 cctggcaaaatgcaacatttcttgtagtga 28962137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 43295959 - 43296004
Alignment:
Q  183 tatagaccatatacattatttattcattgaatttaaaaagtgaaaa 228  Q
    ||||||||| |||||| ||||||| | |||||||||||||||||||    
T  43295959 tatagaccacatacatcatttattgaatgaatttaaaaagtgaaaa 43296004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 30114811 - 30114851
Alignment:
Q  181 tatatagaccatatacattatttattcattgaatttaaaaa 221  Q
    ||||||||||| |||||||| ||||||| ||||||||||||    
T  30114811 tatatagaccaaatacattagttattcaatgaatttaaaaa 30114851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 551 - 638
Target Start/End: Complemental strand, 22016683 - 22016596
Alignment:
Q  551 tatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacaggttc 638  Q
    ||||| ||||||||||||||||||||||||||||| || ||  | || |||||||| ||||| || |||||||| ||||| |||||||    
T  22016683 tatgatcatagagcattggtcattgatggtaaacgcagggttcttatgtctggttccattcattatcctcgtagcactcctcaggttc 22016596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 168
Target Start/End: Complemental strand, 44310046 - 44310016
Alignment:
Q  138 cctggcaaaatgcaacatttcttgtagtgat 168  Q
    |||||||||||||||||||||||||||||||    
T  44310046 cctggcaaaatgcaacatttcttgtagtgat 44310016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 46462449 - 46462391
Alignment:
Q  183 tatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 241  Q
    |||| ||||||||||| ||||||| | ||||| ||||||||||||| ||| ||||||||    
T  46462449 tataaaccatatacatcatttatttaatgaatctaaaaagtgaaaagttgcttataatt 46462391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 5597563 - 5597534
Alignment:
Q  138 cctggcaaaatgcaacatttcttgtagtga 167  Q
    ||||||||||||||||||||||||||||||    
T  5597563 cctggcaaaatgcaacatttcttgtagtga 5597534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 169
Target Start/End: Original strand, 10998962 - 10998991
Alignment:
Q  140 tggcaaaatgcaacatttcttgtagtgatt 169  Q
    ||||||||||||||||||||||||||||||    
T  10998962 tggcaaaatgcaacatttcttgtagtgatt 10998991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 51268782 - 51268753
Alignment:
Q  138 cctggcaaaatgcaacatttcttgtagtga 167  Q
    ||||||||||||||||||||||||||||||    
T  51268782 cctggcaaaatgcaacatttcttgtagtga 51268753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 7627334 - 7627362
Alignment:
Q  138 cctggcaaaatgcaacatttcttgtagtg 166  Q
    |||||||||||||||||||||||||||||    
T  7627334 cctggcaaaatgcaacatttcttgtagtg 7627362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 34745723 - 34745751
Alignment:
Q  138 cctggcaaaatgcaacatttcttgtagtg 166  Q
    |||||||||||||||||||||||||||||    
T  34745723 cctggcaaaatgcaacatttcttgtagtg 34745751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 46462461 - 46462509
Alignment:
Q  193 atacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 241  Q
    |||||| ||||||||| ||||  ||||||||||||||||| ||||||||    
T  46462461 atacatcatttattcaatgaacctaaaaagtgaaaaattgcttataatt 46462509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 34500162 - 34500220
Alignment:
Q  183 tatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 241  Q
    ||||||||| || ||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  34500162 tatagaccacatgcattatttattcaatgaatctaaaaagtgaaaaattgcttataatt 34500220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 37096170 - 37096225
Alignment:
Q  184 atagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataa 239  Q
    ||||| || |||||| ||||||||| ||||| |||||||| |||||||||||||||    
T  37096170 atagatcacatacatcatttattcaatgaatctaaaaagtcaaaaattgtttataa 37096225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 47507634 - 47507584
Alignment:
Q  182 atatagaccatatacattatttattcattgaatttaaaaagtgaaaaattg 232  Q
    |||| |||||||||||| ||||||| | ||||| |||||||||||||||||    
T  47507634 atatggaccatatacataatttattaaatgaatctaaaaagtgaaaaattg 47507584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 19771215 - 19771171
Alignment:
Q  182 atatagaccatatacattatttattcattgaatttaaaaagtgaa 226  Q
    ||||||||||||||||  ||||||| | |||||||||||||||||    
T  19771215 atatagaccatatacaacatttattgaatgaatttaaaaagtgaa 19771171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 23452539 - 23452575
Alignment:
Q  132 tatgctcctggcaaaatgcaacatttcttgtagtgat 168  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  23452539 tatgcccctgacaaaatgcaacatttcttgtagtgat 23452575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 28456861 - 28456905
Alignment:
Q  197 attatttattcattgaatttaaaaagtgaaaaattgtttataatt 241  Q
    |||||||||||| ||||| ||||||||||||  ||||||||||||    
T  28456861 attatttattcaatgaatctaaaaagtgaaatgttgtttataatt 28456905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 39933403 - 39933348
Alignment:
Q  183 tatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttata 238  Q
    |||||||||||||||||||||||||| |||| ||||||| |||||  |||||||||    
T  39933403 tatagaccatatacattatttattcaatgaaattaaaaattgaaacgttgtttata 39933348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 22626810 - 22626870
Alignment:
Q  181 tatatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 241  Q
    ||||||||||| |||||| |||||||   |||||||||||| |||||| ||||||||||||    
T  22626810 tatatagaccacatacatcatttatttcatgaatttaaaaattgaaaagttgtttataatt 22626870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 27094316 - 27094355
Alignment:
Q  182 atatagaccatatacattatttattcattgaatttaaaaa 221  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  27094316 atatagaccatatacataatttattcaatgaatttaaaaa 27094355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 8955400 - 8955351
Alignment:
Q  192 tatacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 241  Q
    |||| |||||||||||| | |||||||||||| |||| ||||||||||||    
T  8955400 tatatattatttattcaataaatttaaaaagtaaaaagttgtttataatt 8955351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 19206422 - 19206393
Alignment:
Q  138 cctggcaaaatgcaacatttcttgtagtga 167  Q
    ||||||||||||||||||||||||||||||    
T  19206422 cctggcaaaatgcaacatttcttgtagtga 19206393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 21488357 - 21488280
Alignment:
Q  182 atatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatttggacctgacggagtatt 259  Q
    |||||||||| ||||||||||||| || |||||| ||||||| ||| |||  |||||| | |||| ||| ||||||||    
T  21488357 atatagaccaaatacattatttatgcaatgaattaaaaaagtcaaatatttcttataaataggacatgagggagtatt 21488280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 167
Target Start/End: Original strand, 34631984 - 34632013
Alignment:
Q  138 cctggcaaaatgcaacatttcttgtagtga 167  Q
    ||||||||||||||||||||||||||||||    
T  34631984 cctggcaaaatgcaacatttcttgtagtga 34632013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 5019593 - 5019565
Alignment:
Q  138 cctggcaaaatgcaacatttcttgtagtg 166  Q
    |||||||||||||||||||||||||||||    
T  5019593 cctggcaaaatgcaacatttcttgtagtg 5019565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 13689087 - 13689135
Alignment:
Q  193 atacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 241  Q
    |||||||||||||||| |||| ||||||||| |||||||  ||||||||    
T  13689087 atacattatttattcaatgaacttaaaaagtaaaaaatttcttataatt 13689135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 22118696 - 22118668
Alignment:
Q  138 cctggcaaaatgcaacatttcttgtagtg 166  Q
    |||||||||||||||||||||||||||||    
T  22118696 cctggcaaaatgcaacatttcttgtagtg 22118668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 27385536 - 27385480
Alignment:
Q  184 atagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataat 240  Q
    |||||||| |||||| ||||||||| ||| | ||||||||||||| ||| |||||||    
T  27385536 atagaccacatacatcatttattcaatgagtctaaaaagtgaaaagttgcttataat 27385480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 27115305 - 27115382
Alignment:
Q  182 atatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatttggacctgacggagtatt 259  Q
    |||||||||| |||||| ||||||||| ||||| ||||||||||||  ||| ||||||||  |||| || ||||||||    
T  27115305 atatagaccacatacataatttattcaatgaatctaaaaagtgaaaggttgcttataattgagaccggagggagtatt 27115382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 24163343 - 24163388
Alignment:
Q  182 atatagaccatatacattatttattcattgaatttaaaaagtgaaa 227  Q
    ||||||||||||||||| |||||| || |||||| |||||||||||    
T  24163343 atatagaccatatacatcatttatgcaatgaattaaaaaagtgaaa 24163388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 167
Target Start/End: Original strand, 27128860 - 27128889
Alignment:
Q  138 cctggcaaaatgcaacatttcttgtagtga 167  Q
    ||||||||||||||||||||||||||||||    
T  27128860 cctggcaaaatgcaacatttcttgtagtga 27128889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 31741949 - 31742006
Alignment:
Q  181 tatatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttata 238  Q
    |||| |||||| |||||| |||||||   ||||||||||||||||||| |||||||||    
T  31741949 tataaagaccacatacatcatttattagatgaatttaaaaagtgaaaagttgtttata 31742006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 23852617 - 23852561
Alignment:
Q  183 tatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataa 239  Q
    ||||||||||||||||  ||| || ||||||| |||||||| |||| ||||||||||    
T  23852617 tatagaccatatacatcgtttctttattgaatctaaaaagtaaaaagttgtttataa 23852561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 43311607 - 43311579
Alignment:
Q  138 cctggcaaaatgcaacatttcttgtagtg 166  Q
    |||||||||||||||||||||||||||||    
T  43311607 cctggcaaaatgcaacatttcttgtagtg 43311579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 133207 - 133257
Alignment:
Q  182 atatagaccatatacattatttattcattgaatttaaaaagtgaaaaattg 232  Q
    |||||||||| ||||||| |||||||| ||||  |||||||||||||||||    
T  133207 atatagaccacatacattgtttattcaatgaacctaaaaagtgaaaaattg 133257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 167
Target Start/End: Original strand, 20133 - 20162
Alignment:
Q  138 cctggcaaaatgcaacatttcttgtagtga 167  Q
    ||||||||||||||||||||||||||||||    
T  20133 cctggcaaaatgcaacatttcttgtagtga 20162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 43493866 - 43493920
Alignment:
Q  182 atatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgttta 236  Q
    |||| |||||||||||| |||||||   ||||||||||||||||||| |||||||    
T  43493866 atatggaccatatacatcatttattagatgaatttaaaaagtgaaaagttgttta 43493920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 19227222 - 19227169
Alignment:
Q  185 tagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttata 238  Q
    |||||||||||||| ||||||| | ||||| ||||||||||||| ||| |||||    
T  19227222 tagaccatatacatcatttattaagtgaatctaaaaagtgaaaagttgcttata 19227169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 51884014 - 51883985
Alignment:
Q  138 cctggcaaaatgcaacatttcttgtagtga 167  Q
    ||||||||||||||||||||||||||||||    
T  51884014 cctggcaaaatgcaacatttcttgtagtga 51883985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 21533534 - 21533562
Alignment:
Q  138 cctggcaaaatgcaacatttcttgtagtg 166  Q
    |||||||||||||||||||||||||||||    
T  21533534 cctggcaaaatgcaacatttcttgtagtg 21533562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 22632179 - 22632207
Alignment:
Q  138 cctggcaaaatgcaacatttcttgtagtg 166  Q
    |||||||||||||||||||||||||||||    
T  22632179 cctggcaaaatgcaacatttcttgtagtg 22632207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 153979 - 154036
Alignment:
Q  181 tatatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttata 238  Q
    ||||||||||| |||||| ||||||| | ||||| ||||||||||||| || ||||||    
T  153979 tatatagaccacatacatcatttattaaatgaatctaaaaagtgaaaagttttttata 154036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 21162473 - 21162433
Alignment:
Q  183 tatagaccatatacattatttattcattgaatttaaaaagt 223  Q
    ||||||||||||||||||||||| || |||||| |||||||    
T  21162473 tatagaccatatacattatttatgcaatgaattaaaaaagt 21162433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University