View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12483_low_2 (Length: 471)
Name: NF12483_low_2
Description: NF12483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12483_low_2 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0359 (1 HSPs) |
| | |
|
| [»] scaffold0065 (1 HSPs) |
| | |
|
| [»] scaffold0671 (2 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0512 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 145 - 338
Target Start/End: Complemental strand, 33757897 - 33757704
Alignment:
| Q |
145 |
ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt |
244 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33757897 |
ttcaactcaaaccattgtcaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaatatttttagttcatttcttgtgtt |
33757798 |
T |
|
| Q |
245 |
ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatcacc |
338 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33757797 |
ttgtgcctttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttcatcacc |
33757704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 152 - 337
Target Start/End: Complemental strand, 13179807 - 13179622
Alignment:
| Q |
152 |
caaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgttttgtgcc |
251 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||| |||| | |||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13179807 |
caaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgttttgtgct |
13179708 |
T |
|
| Q |
252 |
tttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatcac |
337 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13179707 |
tttaattaaactttcagcaagcaacttttatcaattcatgattaaaagtcaaatatgaacaattttcacaaaatagtgttcatcac |
13179622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 152 - 336
Target Start/End: Complemental strand, 13184465 - 13184281
Alignment:
| Q |
152 |
caaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgttttgtgcc |
251 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||| |||| | |||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13184465 |
caaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgttttgtgct |
13184366 |
T |
|
| Q |
252 |
tttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca |
336 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13184365 |
tttaattaaactttcagcaagcaacttttatcaattcatgattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca |
13184281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 13180763 - 13180726
Alignment:
| Q |
112 |
agggcataattgtccatgacacaagtgcttcaattcaa |
149 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13180763 |
agggcatggttgtccatgacacaagtgcttcaattcaa |
13180726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 13185297 - 13185260
Alignment:
| Q |
112 |
agggcataattgtccatgacacaagtgcttcaattcaa |
149 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13185297 |
agggcatggttgtccatgacacaagtgcttcaattcaa |
13185260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 33758841 - 33758804
Alignment:
| Q |
112 |
agggcataattgtccatgacacaagtgcttcaattcaa |
149 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33758841 |
agggcatggttgtccatgacacaagtgcttcaattcaa |
33758804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 145 - 336
Target Start/End: Original strand, 16157174 - 16157365
Alignment:
| Q |
145 |
ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt |
244 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
16157174 |
ttcaactcaaatcattgtcaaaattaatcccaatacataattttcatttctttttggcacaccctttcattaacaatatttttagttcatttctagtgtt |
16157273 |
T |
|
| Q |
245 |
ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca |
336 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16157274 |
ttgtgcctttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca |
16157365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 145 - 336
Target Start/End: Complemental strand, 21368572 - 21368381
Alignment:
| Q |
145 |
ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt |
244 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
21368572 |
ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaatatttttagttcatttcctgtgtt |
21368473 |
T |
|
| Q |
245 |
ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca |
336 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21368472 |
ttgtgcctttaattaatctttcagcaaacaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca |
21368381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 151 - 336
Target Start/End: Complemental strand, 22707614 - 22707434
Alignment:
| Q |
151 |
tcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgttttgtgc |
250 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||||||| ||||||||||||||||| || |||||||||||| | | ||||||||| ||||||||| |
|
|
| T |
22707614 |
tcaaatcattatcaaaattaatcccaatacataattttcttttccttttggcacatcatta---taacaatattttcattccatttcttgtgttttgtgc |
22707518 |
T |
|
| Q |
251 |
ctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca |
336 |
Q |
| |
|
|| || ||||||||| | |||||||||||||||||||||||||||||||| |||||| ||||||||| || ||||||| ||||||| |
|
|
| T |
22707517 |
ctata-ataatctttaatcaagcaacttttatcaattcataattaaaagtcaaatataaacaatttttac-aaatagtattcatca |
22707434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 21369494 - 21369457
Alignment:
| Q |
112 |
agggcataattgtccatgacacaagtgcttcaattcaa |
149 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21369494 |
agggcatggttgtccatgacacaagtgcttcaattcaa |
21369457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 145 - 336
Target Start/End: Complemental strand, 21465196 - 21465005
Alignment:
| Q |
145 |
ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt |
244 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21465196 |
ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattaacaatatttttagttcatttcttgtgtt |
21465097 |
T |
|
| Q |
245 |
ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca |
336 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21465096 |
ttgtgcctttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca |
21465005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 145 - 336
Target Start/End: Complemental strand, 44794681 - 44794490
Alignment:
| Q |
145 |
ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt |
244 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| |||| | |||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44794681 |
ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgtt |
44794582 |
T |
|
| Q |
245 |
ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca |
336 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44794581 |
ttgtgcctttaattaatctttcagcaagcaacttttatcaattcatgattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca |
44794490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 145 - 336
Target Start/End: Original strand, 44794894 - 44795085
Alignment:
| Q |
145 |
ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt |
244 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| |||| | |||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44794894 |
ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgtt |
44794993 |
T |
|
| Q |
245 |
ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca |
336 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44794994 |
ttgtgcctttaattaatctttcagcaagcaacttttatcaattcatgattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca |
44795085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 148; Significance: 6e-78; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 145 - 336
Target Start/End: Original strand, 289110 - 289301
Alignment:
| Q |
145 |
ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt |
244 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
289110 |
ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattaacaatatttttagttcatttcttgtgtt |
289209 |
T |
|
| Q |
245 |
ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca |
336 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
289210 |
ttgagcctttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca |
289301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 145 - 336
Target Start/End: Original strand, 37260555 - 37260746
Alignment:
| Q |
145 |
ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt |
244 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| |||| |||||||||| ||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
37260555 |
ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattgacaatatttttagttcatttcttgtgtt |
37260654 |
T |
|
| Q |
245 |
ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca |
336 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37260655 |
ttgtgcctttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca |
37260746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 149
Target Start/End: Original strand, 37259621 - 37259649
Alignment:
| Q |
121 |
ttgtccatgacacaagtgcttcaattcaa |
149 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37259621 |
ttgtccatgacacaagtgcttcaattcaa |
37259649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0359 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0359
Description:
Target: scaffold0359; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 145 - 336
Target Start/End: Complemental strand, 8694 - 8503
Alignment:
| Q |
145 |
ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt |
244 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| |||| | |||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8694 |
ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgtt |
8595 |
T |
|
| Q |
245 |
ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca |
336 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8594 |
ttgtgcctttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacgaaatagtgttcatca |
8503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 145 - 336
Target Start/End: Complemental strand, 33707 - 33516
Alignment:
| Q |
145 |
ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt |
244 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| ||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
33707 |
ttcaactcaaatcattgtcaaaaataatcccaatgcataattttcgtttccttttggcacaccctttcattaacaataattttagttcatttcttgtgtt |
33608 |
T |
|
| Q |
245 |
ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca |
336 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33607 |
ttgtgcctttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca |
33516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 145 - 336
Target Start/End: Complemental strand, 21299323 - 21299132
Alignment:
| Q |
145 |
ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt |
244 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| |||| | |||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21299323 |
ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgtt |
21299224 |
T |
|
| Q |
245 |
ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca |
336 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21299223 |
ttgtgcctttaattaatctttcagcaagcaacttttatcaattcatgattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca |
21299132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 145 - 323
Target Start/End: Original strand, 9344249 - 9344424
Alignment:
| Q |
145 |
ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt |
244 |
Q |
| |
|
||||||||||||||| || ||||| ||||| ||||||||||||| |||| |||||||||||| || |||||| |||||| || || ||||| || ||| |
|
|
| T |
9344249 |
ttcaactcaaatcatcgtcaaaatcaatcctaatacataattttcgtttc-ttttggcacatcatt-cattaa-aatattatttgtccatttattttgtt |
9344345 |
T |
|
| Q |
245 |
ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaa |
323 |
Q |
| |
|
|||||||| || |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9344346 |
ttgtgcctataattaatatttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaa |
9344424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 12638793 - 12638830
Alignment:
| Q |
112 |
agggcataattgtccatgacacaagtgcttcaattcaa |
149 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12638793 |
agggcatggttgtccatgacacaagtgcttcaattcaa |
12638830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 21302654 - 21302617
Alignment:
| Q |
112 |
agggcataattgtccatgacacaagtgcttcaattcaa |
149 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21302654 |
agggcatggttgtccatgacacaagtgcttcaattcaa |
21302617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0671 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: scaffold0671
Description:
Target: scaffold0671; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 145 - 337
Target Start/End: Original strand, 2272 - 2464
Alignment:
| Q |
145 |
ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt |
244 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||| ||||| |||| |||||||||| | |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2272 |
ttcaactcaaatcattgtcaaaattaatcccaatacatgattttcgtttctttttggcacaccttttcattaacaatatttttagttcatttcttgtgtt |
2371 |
T |
|
| Q |
245 |
ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatcac |
337 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2372 |
ttgtgcctttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttctcaaaatagtgttcatcac |
2464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0671; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 149
Target Start/End: Original strand, 1227 - 1255
Alignment:
| Q |
121 |
ttgtccatgacacaagtgcttcaattcaa |
149 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1227 |
ttgtccatgacacaagtgcttcaattcaa |
1255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 145 - 337
Target Start/End: Complemental strand, 16417483 - 16417291
Alignment:
| Q |
145 |
ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt |
244 |
Q |
| |
|
|||||||||||||||||| ||||| |||| |||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16417483 |
ttcaactcaaatcattgtcaaaattaatctcaatacataattttcgtttctttttggcacaccctttcattaacaatatttttagttcatttcttgtgtt |
16417384 |
T |
|
| Q |
245 |
ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatcac |
337 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16417383 |
ttgcgcctttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcataaaatagtgttcatcac |
16417291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 145 - 337
Target Start/End: Complemental strand, 17459784 - 17459592
Alignment:
| Q |
145 |
ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt |
244 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||| ||||||||| ||| |
|
|
| T |
17459784 |
ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaataattttagatcatttcttatgtt |
17459685 |
T |
|
| Q |
245 |
ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatcac |
337 |
Q |
| |
|
||| | ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17459684 |
ttgagactttaattaatctttcagcaagcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttcatcac |
17459592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 145 - 336
Target Start/End: Complemental strand, 18774231 - 18774040
Alignment:
| Q |
145 |
ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt |
244 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| |||| | |||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18774231 |
ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgtt |
18774132 |
T |
|
| Q |
245 |
ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca |
336 |
Q |
| |
|
||||||||||| ||||||||| |||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
18774131 |
ttgtgcctttaattaatctttctgcaagcaatttttatcaattcataattaaaagtcaaatatgatcaattttcacaaaatagtgttcatca |
18774040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 18775177 - 18775140
Alignment:
| Q |
112 |
agggcataattgtccatgacacaagtgcttcaattcaa |
149 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18775177 |
agggcatggttgtccatgacacaagtgcttcaattcaa |
18775140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 4e-73; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 145 - 332
Target Start/End: Original strand, 11475790 - 11475977
Alignment:
| Q |
145 |
ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt |
244 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11475790 |
ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattaacaatatttttagttcatttcttaagtt |
11475889 |
T |
|
| Q |
245 |
ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttc |
332 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11475890 |
ttgtgcctttaattaatctttcagcaatcaacttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttc |
11475977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 164 - 336
Target Start/End: Original strand, 34455906 - 34456079
Alignment:
| Q |
164 |
aaaataaatcccaatacataatttttat-ttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgttttgtgcctttatataatc |
262 |
Q |
| |
|
||||| |||||||||| |||||||| || ||||||||| |||||| ||||||| |||||||||| ||| ||||||| ||||||||||| ||| ||||| |
|
|
| T |
34455906 |
aaaattaatcccaatatataattttcatgttccttttg-cacatcatttcattcacaatattttcagtctatttcttatgttttgtgcctatatttaatc |
34456004 |
T |
|
| Q |
263 |
tttcagcaagcaac-ttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca |
336 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34456005 |
tttcagcaagcaactttttaccaattcataattaaaagtcaaatatgaacaattttcacaaaacagtgttcatca |
34456079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 34454924 - 34454961
Alignment:
| Q |
112 |
agggcataattgtccatgacacaagtgcttcaattcaa |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34454924 |
agggcataattgtccatgacacaagtgcttcaattcaa |
34454961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 11474846 - 11474883
Alignment:
| Q |
112 |
agggcataattgtccatgacacaagtgcttcaattcaa |
149 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11474846 |
agggcatggttgtccatgacacaagtgcttcaattcaa |
11474883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 9e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 145 - 336
Target Start/End: Complemental strand, 22821224 - 22821033
Alignment:
| Q |
145 |
ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt |
244 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22821224 |
ttcaactcaattcattgccaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaatatttttagttcatttcttgtgtt |
22821125 |
T |
|
| Q |
245 |
ttgtgcctttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatca |
336 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
22821124 |
ttgtacctttaattaatctttcagcaagcaacttttatcaattcataattataagtcaaatatgaacaattttcacaaaatagtgtttatca |
22821033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 22825904 - 22825867
Alignment:
| Q |
112 |
agggcataattgtccatgacacaagtgcttcaattcaa |
149 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22825904 |
agggcatggttgtccatgacacaagtgcttcaattcaa |
22825867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 152 - 337
Target Start/End: Original strand, 127181 - 127366
Alignment:
| Q |
152 |
caaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgttttgtgcc |
251 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||| |||| | |||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
127181 |
caaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgttttgtgct |
127280 |
T |
|
| Q |
252 |
tttatataatctttcagcaagcaacttttatcaattcataattaaaagtaaaatatgaacaattttcacaaaatagtgttcatcac |
337 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
127281 |
tttaattaaactttcagcaagcaacttttatcaattcatgattaaaagtcaaatatgaacaattttcacaaaatagtgttcatcac |
127366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0512 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0512
Description:
Target: scaffold0512; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 41 - 4
Alignment:
| Q |
112 |
agggcataattgtccatgacacaagtgcttcaattcaa |
149 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41 |
agggcatggttgtccatgacacaagtgcttcaattcaa |
4 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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