View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12483_low_4 (Length: 324)

Name: NF12483_low_4
Description: NF12483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12483_low_4
NF12483_low_4
[»] chr2 (1 HSPs)
chr2 (21-317)||(33759300-33759595)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 33759300 - 33759595
Alignment:
Q  21 attcatcatttttgtttctcataaaaatatgatctgatttgtttgtatcaaatcatttaattatatttcactatgaagatgccttttttgttattatcat 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||    
T  33759300 attcatcatttttgtttctcataaaaatatgatctgatttgtttgtatcaaatcatttaattatatttcactgtgatgat-ccttttttgttattatcat 33759398  T
Q  121 attagtagtttgattctatcttcaatatgtggtcgaactcgaatgtttgattcagatctcatgcttatgatcaaattcactatttgaaaaaggcaattca 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33759399 attagtagtttgattctatcttcaatatgtggtcgaactcgaatgtttgattcagatctcatgcttatgatcaaattcactatttgaaaaaggcaattca 33759498  T
Q  221 tagatgcatttcaggtcatcggaagaaaatagtctttagagttgaacatagatattatgtggtaatttgataatcactctgctggtaatctctgctt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33759499 tagatgcatttcaggtcatcggaagaaaatagtctttagagttgaacatagatattatgtggtaatttgataatcactctgctggtaatctctgctt 33759595  T

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