View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12484_high_1 (Length: 288)
Name: NF12484_high_1
Description: NF12484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12484_high_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 2327350 - 2327619
Alignment:
| Q |
18 |
atatcacatttgattaaatgataagacttatcaatcaaatggtaaaaacaaatttgtatatgttggaaaacttgtcttactaatacaccttaaaattgga |
117 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2327350 |
atatcgcatttgattaaaagataagacttatcaatcaaatggtaaaaacaaatttgtatatgttgcaaaacttgtcttactaatacaccttaaaattgga |
2327449 |
T |
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| Q |
118 |
gaaagcataaacttaggtgcttaactaactatataagtgaaaagaataatgtttacgagacttatctcaaaatacaacatattcttctagatctgacagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2327450 |
caaagcataaacttaggtgcttaactaactatataagtgaaaagaataatg-ttatgagacttatctcaaaatacaacatattcttctagatctgacagc |
2327548 |
T |
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| Q |
218 |
attttggatgcagtgtttcttacaggcttcttcacagatacaccgatatagcaccattctcagggttaacc |
288 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2327549 |
attttggatgcagtgtttcttacaggcttcatcacagatacaccgatatagcaccattctcagggttaacc |
2327619 |
T |
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