View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12484_low_4 (Length: 223)
Name: NF12484_low_4
Description: NF12484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12484_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 49277586 - 49277777
Alignment:
| Q |
10 |
aggagcagagagagtaccaggaacagaaggacagtacagaaagctataaatctcataagcatgttctccctcaagcctctcaatcttgaactggctaaaa |
109 |
Q |
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| T |
49277586 |
aggagcacaaagagtaccaggaacagaaggacagtacagaaagctataaatctcataagcatgttctccctcaagcctctcaatcttaaactggctaaaa |
49277685 |
T |
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| Q |
110 |
aggttcccaggaaaaccaccggtgctcacaaaccaaaacctagctctagttccctcttttgaaatcttccacacttttctctcactgcaagg |
201 |
Q |
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| T |
49277686 |
aggttcccaggaaaaccaccggtgctcacaaaccaaaacctagctctagttccctcttttgaaatcttccacacttttctctcactgcaagg |
49277777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 49271684 - 49271808
Alignment:
| Q |
25 |
accaggaacagaaggacagtacagaaagctataaatctcataagcatgttctccctcaagcctctcaatcttgaactggctaaaaaggttcccaggaaaa |
124 |
Q |
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| T |
49271684 |
accaggaacagagggacagaacttaaagctatatatctcataagcatgttcacctgcaagcctctcaatcttgaacttgctaacaagatccccagctgca |
49271783 |
T |
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| Q |
125 |
ccaccggtgctcacaaaccaaaacc |
149 |
Q |
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| T |
49271784 |
ccaccagtgctcacaaaccaaaacc |
49271808 |
T |
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