View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12485_high_3 (Length: 416)
Name: NF12485_high_3
Description: NF12485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12485_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Complemental strand, 55162217 - 55161834
Alignment:
| Q |
11 |
cagagagacaaaactataattagattcttctatatatcttttaatatataccttacctatgagacaccaaatt-----gtttttaatttgaagtgtgagt |
105 |
Q |
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| T |
55162217 |
cagagagacaaaactataattagattcttctatatatcttttaatatatacct-----atgagacaccaaattaaattgtttttaatttgaagtgtgagt |
55162123 |
T |
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| Q |
106 |
gctgaagtgaagattagcttggactgactcacagtgttgatgatatattgttggttgattctccattggtgatgagtaaatggctgcagtgattgacttg |
205 |
Q |
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| T |
55162122 |
gctgaagtgaagattagcttggactgactcacagtgttgatgatatattgttggttgattctccattggtgctgagtaaatggctgcaatgattgacttg |
55162023 |
T |
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| Q |
206 |
ctatatctatatccacatcttttccatctgagttatgaaagaagatggtagatgaatttgaaggagaattgagaagaaatccacctttgagaaatgacca |
305 |
Q |
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| T |
55162022 |
ctatatctatatccacatcttttccatctgagttatgaaagaagatggtagatgaatttgaaggagaattgagaagaaatccacctttgagaaatgacca |
55161923 |
T |
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| Q |
306 |
acatccacgtttggccaaaactgtcccaatacagttatatgtctcattttctgtttctagctttgcctttatcataactgaatctgaat |
394 |
Q |
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| T |
55161922 |
acatccacgtttggccaaaactgtcccaatacagttatatgtctcattttctgtttctagctttgcctttatcataactgaatctgaat |
55161834 |
T |
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