View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12485_high_4 (Length: 400)

Name: NF12485_high_4
Description: NF12485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12485_high_4
NF12485_high_4
[»] chr5 (1 HSPs)
chr5 (7-301)||(2698461-2698755)


Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 2698461 - 2698755
Alignment:
Q  7 tttttcgctctgattttggctcatacttatactccaagttaggttaaactatgaagaagacgacaaattgtactctttggtgtatggtagtcggtgttga 106  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2698461 tttttcgctctgattttggctcatacttataatccaagttaggttaaactatgaagaagatgacaaattgtactctttggtgtatggtagtcggtgttga 2698560  T
Q  107 aattgcaagattgttgacccaatcataaattgtagtaagagcagactatacaacgatgtggtagttgaatcaaatatggaaaatgaaaaaagtagatgat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2698561 aattgcaagattgttgacccaatcataaattgtagtaagagcagactatacaacgatgtggtagttgaatcaaatatggaaaatgaaaaaagtagatgat 2698660  T
Q  207 aaagggaaattggaatgacatagaaaatagattaatttgttgtacaagatagatgataaaaatggtagtaactgcagactaaattggttgaatcc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2698661 aaagggaaattggaatgacatagaaaatagattaatttgttgtacaagatagatgataaaaatggtagtaactgcagactaaattggttgaatcc 2698755  T

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