View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12485_high_5 (Length: 330)
Name: NF12485_high_5
Description: NF12485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12485_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 37112508 - 37112810
Alignment:
| Q |
10 |
gaagcagagagacaagaagaatttgaaggagaaagtgaagggtaggagttggtaaccccattgctttgagaaattcaa-tcttttgctttgtttttcaat |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37112508 |
gaagtagagagacaagaagaatttgaaggagaaagtgaagggtaggaattggtaaccccattgctttgagaaattcaactcttttgctttgtttttcaat |
37112607 |
T |
|
| Q |
109 |
gcaatagaagcaaaaccttgggttttataacggaacagtatgaatattaccctgcttctgaaaaaaacgatttttgtataa----cnnnnnnnnnnnngg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37112608 |
gcaatagaagcaaaaccttgggttttataaaggaacgatatgaatattaccctgcttctgaaaaaaacgatttttgtataaggtttttttttttggttgg |
37112707 |
T |
|
| Q |
205 |
tgtgaaagacagtgtatgcaggatagaatcgtttaaaacatattaaaacaaatggtaaaagtatcaaaatcgatattaaagtattttaaataattattaa |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
37112708 |
tgtgaaagacagtgtatgcaggatagaatcgtttaaaacatattaaaacaaatagtaaaagtatcaaaatcgatattaaagtgttttaaataactattaa |
37112807 |
T |
|
| Q |
305 |
tcc |
307 |
Q |
| |
|
||| |
|
|
| T |
37112808 |
tcc |
37112810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University