View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12485_low_1 (Length: 623)
Name: NF12485_low_1
Description: NF12485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12485_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 50 - 611
Target Start/End: Original strand, 9647939 - 9648500
Alignment:
| Q |
50 |
aagactctgagctaatcaaacatgactcgctgcataaaacatcgccaaagaaagaccaaggtgtattattttgtgcttcattcaattcaaccacttcatt |
149 |
Q |
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| T |
9647939 |
aagactctgagctaatcaaacatgactcgctgcataaaacatcgccaaagaaagaccaaggtgtattattgtttgcttcattcaattcaaccacttcatt |
9648038 |
T |
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| Q |
150 |
atttattttatttctttcattgtgaacacatctaatttttgtggcattgtgcaaaatttatatccgggactccaagaaacgaagcgaatcatcttcttca |
249 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9648039 |
atttattttatttctttcattgtgaacacgtctaatttttgtggcattgtgcaaaatttatatccgggactccaagaaacgaagcgaatcatcttcttca |
9648138 |
T |
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| Q |
250 |
gtgccacagcttccggttaaagtgtggcaacctggtgtggacaggttggaagaagatgaagaacttcagtgtgatccttctgcttacaactctcttcatg |
349 |
Q |
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| T |
9648139 |
gtgccacagcttccagttaaagtgtggcaacctggtgtggacaggttggaagaagatgaagaacttcagtgtgatccttctgcttacaactctcttcatg |
9648238 |
T |
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| Q |
350 |
cttttcatattggatggccttgtcttaggtaatttccatacagttgttaagttccttttggcattagcattgcaattcaagaggagaatctatgccacat |
449 |
Q |
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| T |
9648239 |
cttttcatattggatggccttgtcttaggtaatttccatacagttgttaagttccttttggcattagcattgcaattcaagaggagaatctacgccacat |
9648338 |
T |
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| Q |
450 |
tttttagtgtttgcttaaattctgcttggtatatgtggaattcatgtcatgaattctgtttcgtttgtgtattttgacagctttgatattgtaagagaca |
549 |
Q |
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| T |
9648339 |
tttttagtgtttgcttaaattctgcttggtatatgtggaattcatgtcatgaattctgtttcgtttgtgtattttgacagctttgatattgtaagagaca |
9648438 |
T |
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| Q |
550 |
cctcgggcttagttcgaaaagaatttccacacacggtgtatttcatggcagggacacaggtt |
611 |
Q |
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| T |
9648439 |
cctcgggcttagttcgaaaagaatttccacacacggtgtatttcatggcagggacacaggtt |
9648500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 252 - 381
Target Start/End: Complemental strand, 34739403 - 34739274
Alignment:
| Q |
252 |
gccacagcttccggttaaagtgtggcaacctggtgtggacaggttggaagaagatgaagaacttcagtgtgatccttctgcttacaactctcttcatgct |
351 |
Q |
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| T |
34739403 |
gccacaggttccggtaaaagtgtggcaacctggtgtggataagttggaagaagatgaagagcttcagtgtgatccttctgcttacaactctcttcatgct |
34739304 |
T |
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| Q |
352 |
tttcatattggatggccttgtcttaggtaa |
381 |
Q |
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| T |
34739303 |
tttcatattggatggccttgccttaggtaa |
34739274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 492 - 611
Target Start/End: Complemental strand, 34738928 - 34738809
Alignment:
| Q |
492 |
catgtcatgaattctgtttcgtttgtgtattttgacagctttgatattgtaagagacacctcgggcttagttcgaaaagaatttccacacacggtgtatt |
591 |
Q |
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| T |
34738928 |
catgtcatgatttattttttgtttggggattttgacagcttcgatattttacgtgacaccatgggtttagttcgaacagaatttccacacacagtgtatt |
34738829 |
T |
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| Q |
592 |
tcatggcagggacacaggtt |
611 |
Q |
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|||| |||||||||||||| |
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| T |
34738828 |
tcattacagggacacaggtt |
34738809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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