View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12485_low_2 (Length: 506)
Name: NF12485_low_2
Description: NF12485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12485_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Original strand, 170355 - 170801
Alignment:
| Q |
19 |
aatcaaatgagagttttaagtgatttgtcaatgaggtattcacaacctttgaattgctcatatcaactttctctagcacctttttaatgtagcttttatg |
118 |
Q |
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| T |
170355 |
aatcaaatgagagttttaagtgatttgtcaatgaggtattcacaacctttgaattgctcatatcaactttctctagcacctttttaatgtagcttttatg |
170454 |
T |
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| Q |
119 |
agagagtcataattttctagcactcatatccttgaggtagtcgttttcgtgtagactacttacggaaatcaagttctttttcaattttgaaatacctcac |
218 |
Q |
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| T |
170455 |
agagagtcataattttctagcactcatatccttgagatagtcgttttcgtgtagactacttacggaaatcaagttctttttcaattttgaaatacctcac |
170554 |
T |
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| Q |
219 |
ttgaatgtagtgaaccacttccattgcagcgtcatgtggtaagaacaaccaaagtcaagaatccacacataagcacacttgtcaggtgaaacacaaataa |
318 |
Q |
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| T |
170555 |
ttgaatgtagtgaaccacttccagtgcggcgtcatgtggtaagaacaaccaaagtcaagaatccacacataagcacacttgccaggtgaaacacaaataa |
170654 |
T |
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| Q |
319 |
tatctccttcactgtcaaaatcatcggtttggaccacatttgcttaactggacggatcatattttttgctcggacaatacctctttcaatgcttgatatg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
170655 |
tatctccttcactgtcaaaatcatcggtttggaccacatttgcttaactggacgggtcatattttttgttcggacaatacctctttcaatgcttgatatg |
170754 |
T |
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| Q |
419 |
ttaccaatcaaagcactaaattgttattctgttctttaattttgatc |
465 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
170755 |
ttaccaaccaaagcactaaattgttattttgttctttaattttgatc |
170801 |
T |
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