View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12485_low_3 (Length: 504)
Name: NF12485_low_3
Description: NF12485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12485_low_3 |
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| [»] scaffold1719 (2 HSPs) |
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| [»] scaffold1248 (1 HSPs) |
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| [»] scaffold0952 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 20 - 489
Target Start/End: Original strand, 54405917 - 54406382
Alignment:
| Q |
20 |
ttgtgcagacgagggcaataccagaatacattattgcaagttatcgcatgcaataatgcatcttctgataccacctcacgggaatctgttatggaccata |
119 |
Q |
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| T |
54405917 |
ttgtgcagacgagg-caataccagaatacattattgcaagttatcgcatgcaat---gcatcttctgataccacctcacgggaatctgttatggaccata |
54406012 |
T |
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| Q |
120 |
acctctagtcttcattgggatcttcttagtccataacagaatcacaacatggccaaaacccaccgagacttctggccaaaacagtacgtaccatgagaaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54406013 |
acctctagtcttcattgggatcttcttagtccataacagaatcacaacatggccaaaacccaccgagacttctggccaaaacagtacgtaccatgagaaa |
54406112 |
T |
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| Q |
220 |
cactagtatacgtgtaggatttgcatgctcaagtagataagcatgacacatcatatatatttggataattttgttgtagttatctgaaaagcaacggttg |
319 |
Q |
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| T |
54406113 |
cactagtatacgtgtaggatttgcatgctcaagtagataagcatgacacatcatatatatgtggataattttgttgtagttatctgaaaagcaacggttg |
54406212 |
T |
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| Q |
320 |
ttacattaagttaaagtaaattacaacacgcaaagactactgttttaatggagagagtggcagactgaagaagtgtccagcatatctatgcaacacaaca |
419 |
Q |
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| T |
54406213 |
ttacattaagttaaagtaaattacaacacgcaaagactactgttttaatggagagagtggcagacagaagaagtgtccagcatatctatgcaacacaaca |
54406312 |
T |
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| Q |
420 |
taccaatatgtcagaaagtttgaaatatgagcaaccttcaatgttcaactttaattttgtttgaaatcac |
489 |
Q |
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| T |
54406313 |
taccaatatgtcagaaagtttgaaatatgagcaaccttcaatgttcaactttaattttgtttgaaatcac |
54406382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 359 - 472
Target Start/End: Original strand, 20600493 - 20600602
Alignment:
| Q |
359 |
ctgttttaatggagagagtggcagactgaagaagtgtccagcatatctatgcaacacaacataccaatatgtcagaaagtttgaaatatgagcaaccttc |
458 |
Q |
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|||||||||| |||||||||||||||||||| |||| |||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |||||| |
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| T |
20600493 |
ctgttttaatagagagagtggcagactgaag---tgtctagcatatctatgcaactcaacatagcaatatgtcag-aagtttgaaatatgagtaaccttg |
20600588 |
T |
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| Q |
459 |
aatgttcaacttta |
472 |
Q |
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| T |
20600589 |
aatgttcaaattta |
20600602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1719 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold1719
Description:
Target: scaffold1719; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 472
Target Start/End: Original strand, 290 - 345
Alignment:
| Q |
416 |
aacataccaatatgtcagaaagtttgaaatatgagcaaccttcaatgttcaacttta |
472 |
Q |
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| T |
290 |
aacatagcaatatgtcagaa-gtttgaaatatgagtaaccttcaatgttcaaattta |
345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1719; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 248 - 285
Alignment:
| Q |
315 |
ggttgttacattaagttaaagtaaattacaacacgcaa |
352 |
Q |
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| T |
248 |
ggttgttacattaagtaaaagtaaattagaacacgcaa |
285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1248 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1248
Description:
Target: scaffold1248; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 467
Target Start/End: Original strand, 2169 - 2272
Alignment:
| Q |
362 |
ttttaatggagagagtggcagactgaagaagtgtccagcatatctatgcaacacaa-cataccaa-tatgtcagaaagtttgaaatatgagcaaccttca |
459 |
Q |
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||||||| || |||||||||||||||| |||| |||||||||||||||| ||| |||| ||| | |||||||| |||||| ||||||| |||||||| |
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| T |
2169 |
ttttaatagaaagagtggcagactgaaa---tgtctagcatatctatgcaactcaaacatagcaaatctgtcagaa-gtttgatatatgagtaaccttca |
2264 |
T |
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| Q |
460 |
atgttcaa |
467 |
Q |
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| T |
2265 |
atgttcaa |
2272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0952 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0952
Description:
Target: scaffold0952; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 467
Target Start/End: Complemental strand, 144 - 41
Alignment:
| Q |
362 |
ttttaatggagagagtggcagactgaagaagtgtccagcatatctatgcaacacaa-cataccaa-tatgtcagaaagtttgaaatatgagcaaccttca |
459 |
Q |
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||||||| || |||||||||||||||| |||| |||||||||||||||| ||| |||| ||| | |||||||| |||||| ||||||| |||||||| |
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| T |
144 |
ttttaatagaaagagtggcagactgaaa---tgtctagcatatctatgcaactcaaacatagcaaatctgtcagaa-gtttgatatatgagtaaccttca |
49 |
T |
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| Q |
460 |
atgttcaa |
467 |
Q |
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| T |
48 |
atgttcaa |
41 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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