View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12485_low_6 (Length: 330)
Name: NF12485_low_6
Description: NF12485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12485_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 37112508 - 37112810
Alignment:
| Q |
10 |
gaagcagagagacaagaagaatttgaaggagaaagtgaagggtaggagttggtaaccccattgctttgagaaattcaa-tcttttgctttgtttttcaat |
108 |
Q |
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| T |
37112508 |
gaagtagagagacaagaagaatttgaaggagaaagtgaagggtaggaattggtaaccccattgctttgagaaattcaactcttttgctttgtttttcaat |
37112607 |
T |
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| Q |
109 |
gcaatagaagcaaaaccttgggttttataacggaacagtatgaatattaccctgcttctgaaaaaaacgatttttgtataa----cnnnnnnnnnnnngg |
204 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37112608 |
gcaatagaagcaaaaccttgggttttataaaggaacgatatgaatattaccctgcttctgaaaaaaacgatttttgtataaggtttttttttttggttgg |
37112707 |
T |
|
| Q |
205 |
tgtgaaagacagtgtatgcaggatagaatcgtttaaaacatattaaaacaaatggtaaaagtatcaaaatcgatattaaagtattttaaataattattaa |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
37112708 |
tgtgaaagacagtgtatgcaggatagaatcgtttaaaacatattaaaacaaatagtaaaagtatcaaaatcgatattaaagtgttttaaataactattaa |
37112807 |
T |
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| Q |
305 |
tcc |
307 |
Q |
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||| |
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| T |
37112808 |
tcc |
37112810 |
T |
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