View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12485_low_7 (Length: 276)
Name: NF12485_low_7
Description: NF12485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12485_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 12034848 - 12035119
Alignment:
| Q |
1 |
taatgatgttatatgtttaggaatatataaattgatgtatgtgcttaatgactattaatacaagctttttatacatgatctaggataactgttcggaaga |
100 |
Q |
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| T |
12034848 |
taatgattttatatgtttaggaatatagaaattgatgtatgtgcttaatgactattaatacaagctttttatacatgatctaggataaatgttcggaaga |
12034947 |
T |
|
| Q |
101 |
cagtaatgttagagatatcgtattatcacaaacttacttaagacgttagggagttgtgataaaagcataaggt------------taatgggcttagcta |
188 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||| || |||||| |||||||| |||||||||||| ||||||||||||||| |
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| T |
12034948 |
cagtaacgttagagatatcgtatcatcacaaacttacttaaaacattagggggttgtgatcaaagcataaggttatgcactgacataatgggcttagcta |
12035047 |
T |
|
| Q |
189 |
ttttgctaaatcatcgtcgtaatactactgaatcaattgttgtaatttagacgtggttatcaaatatcaaag |
260 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12035048 |
ttttgctaaatcatcgttgtaatactaatgaatcaattgttgtaatttagacgtggttaccaaatatcaaag |
12035119 |
T |
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